Dataset Information

Genome-wide identification of Dickeya solani genes regulated in response to potato (Solanum tuberosum L.) and bittersweet nightshade (Solanum dulcamara L.) tissues

ABSTRACT: The purpose of this study was to identify and characterize the D. solani genes that are differentially expressed in the early stages of infection of S. tuberosum (model for primary crop host) and S. dulcamara (model plant for alternative non-crop host) by a process of a random mutagenesis of D. solani IPO2222 genome using Tn5 transposon and a promotorless gusA reported gene. This was done as an initial step to better understand the mechanisms used by D. solani to colonize (primary and alternative) plant hosts. The aim of this study was also to associate the identified bacterial genes with phenotypes including ecological fitness and virulence in host plants. The implications of the findings are discussed.

INSTRUMENT(S): TripleTOF 5600

ORGANISM(S): Solanum Tuberosum (potato)

TISSUE(S): Plant Cell

SUBMITTER: Paulina Czaplewska

LAB HEAD: Paulina Malgorzata Czaplewska

PROVIDER: PXD017118 | Pride | 2021-09-09

REPOSITORIES: Pride

ACCESS DATA

Dataset's files

Source:

			Action	DRS
	2019-05-24_Solanum_D_FASP.group	Other
	2019-05-24_Solanum_D_FASP.wiff	Wiff
	2019-05-24_Solanum_D_FASP.wiff.scan	Wiff
	2019-05-24_Solanum_D_FASP__FDR.xlsx	Xlsx
	2019-05-24_Solanum_T_FASP.group	Other

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Publications

Genome-Wide Identification of Dickeya solani Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host Solanum tuberosum and a Weed-Host Solanum dulcamara.

Czajkowski Robert R Fikowicz-Krosko Jakub J Maciag Tomasz T Rabalski Lukasz L Czaplewska Paulina P Jafra Sylwia S Richert Malwina M Krychowiak-Maśnicka Marta M Hugouvieux-Cotte-Pattat Nicole N

Frontiers in plant science 20200902

Dickeya solani is a Gram-negative bacterium able to cause disease symptoms on a variety of crop and ornamental plants worldwide. Weeds including Solanum dulcamara (bittersweet nightshade) growing near agricultural fields have been reported to support populations of soft rot bacteria in natural settings. However, little is known about the specific interaction of D. solani with such weed plants that may contribute to its success as an agricultural pathogen. The aim of this wor ...[more]

PMID: 32983224

Dataset Information

Genome-wide identification of Dickeya solani genes regulated in response to potato (Solanum tuberosum L.) and bittersweet nightshade (Solanum dulcamara L.) tissues

Dataset's files

Publications

Genome-Wide Identification of <i>Dickeya solani</i> Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host <i>Solanum tuberosum</i> and a Weed-Host <i>Solanum dulcamara</i>.

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Dataset Information

Genome-wide identification of Dickeya solani genes regulated in response to potato (Solanum tuberosum L.) and bittersweet nightshade (Solanum dulcamara L.) tissues

Dataset's files

Publications

Genome-Wide Identification of &lt;i&gt;Dickeya solani&lt;/i&gt; Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host &lt;i&gt;Solanum tuberosum&lt;/i&gt; and a Weed-Host &lt;i&gt;Solanum dulcamara&lt;/i&gt;.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets

Genome-Wide Identification of <i>Dickeya solani</i> Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host <i>Solanum tuberosum</i> and a Weed-Host <i>Solanum dulcamara</i>.