Proteomics

Dataset Information

0

Benchmarking of different methods for obtaining high quality secretomics data


ABSTRACT: The main drawback of secretome analyses are contaminating proteins derived from culture medium or proteins released from dying cells which are hard to distinguish from proteins actively secreted by cells. Therefore, several approaches have been applied allowing to remove contamination from secretome analysis. Here, we will compare these approaches and will evaluate their potential to determine proteins secreted by unconventional secretory pathways.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Lung, Fibroblast Of Dermis, Cell Culture, Mesenchymal Cell

DISEASE(S): Lung Cancer

SUBMITTER: Gereon Poschmann  

LAB HEAD: Gereon Poschmann

PROVIDER: PXD018895 | Pride | 2020-10-19

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
QX03709.raw Raw
QX03710.raw Raw
QX03711.raw Raw
QX03712.raw Raw
QX03713.raw Raw
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Publications

Comparative Secretomics Gives Access to High Confident Secretome Data: Evaluation of Different Methods for the Determination of Bona Fide Secreted Proteins.

Poschmann Gereon G   Brenig Katrin K   Lenz Thomas T   Stühler Kai K  

Proteomics 20201117 2


Secretome analysis is broadly applied to understand the interplay between cells and their microenvironment. In particular, the unbiased analysis by mass spectrometry-based proteomics of conditioned medium has been successfully applied. In this context, several approaches have been developed allowing to distinguish proteins actively secreted by cells from proteins derived from culture medium or proteins released from dying cells. Here, three different methods comparing conditioned medium and lysa  ...[more]

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