Proteomics

Dataset Information

0

DIA analysis of colorectal cancer organoids


ABSTRACT: The goal of this project was to characterize the proteome and phosphoproteome of colorectal cancer organoids.

INSTRUMENT(S): Orbitrap Fusion Lumos

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Cell Culture, Colon

DISEASE(S): Colon Cancer

SUBMITTER: Peter Blattmann  

LAB HEAD: Ruedi Aebersold

PROVIDER: PXD018913 | Pride | 2023-12-10

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
20200427_223145_PB_200405_CRC_P_Report.xls Xls
20200428_000713_PB_200419_CRC_TL_Report.xls Xls
DIA_windows.txt Txt
PB_200425_CRC_P_ConditionSetup.xls Xls
PB_200426_CRC_TL_ConditionSetup.xls Xls
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Publications


Precision oncology approaches for patients with colorectal cancer (CRC) continue to lag behind other solid cancers. Functional precision oncology-a strategy that is based on perturbing primary tumor cells from cancer patients-could provide a road forward to personalize treatment. We extend this paradigm to measuring proteome activity landscapes by acquiring quantitative phosphoproteomic data from patient-derived organoids (PDOs). We show that kinase inhibitors induce inhibitor- and patient-speci  ...[more]

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