Proteomics

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Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing

ABSTRACT: As the SARS-CoV-2 pandemic continues to spread, thousands of scientists around the globe have changed research direction to understand better how the virus works and to find out how it may be tackled. To facilitate proteomic research on SARS-CoV-2, we presents deep-scale proteomes of common cell line models (Calu-3, Caco-2, ACE2 transfected A549 and Vero E6) and monitors changes of the proteome upon viral infection in Vero E6 cells. We provide high quality proteome expression data that can be used to refine the annotation of protein coding regions of the Vero E6 cell line genome. Further, we generated spectral libraries that can be used DIA cell line experiments or PRM assays of SARS-CoV-2 proteins.

INSTRUMENT(S): Orbitrap Fusion Lumos

ORGANISM(S): Cercopithecus Aethiops (green Monkey) (grivet) Homo Sapiens (human) Chlorocebus Sabaeus

TISSUE(S): Epithelial Cell Of Lung, Kidney Epithelial Cell, Colon Epithelial Cell

DISEASE(S): Covid-19

SUBMITTER: Chien-Yun Lee  

LAB HEAD: Bernhard Kuster

PROVIDER: PXD019645 | Pride | 2020-07-15

REPOSITORIES: Pride

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Dataset's files

Source:
Action DRS
2697049_UP000464024_SARSCoV2_22Mar2020.fasta Fasta
3931_GC1_JPT_CovidMix_1pmol_30k_15min.raw Raw
3931_GC1_JPT_CovidMix_1pmol_60k_15min.raw Raw
3947_GA1_043922_S00_U01_R1.raw Raw
3947_GA2_043922_S00_U16_R1.raw Raw
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Publications

Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing.

Zecha Jana J   Lee Chien-Yun CY   Bayer Florian P FP   Meng Chen C   Grass Vincent V   Zerweck Johannes J   Schnatbaum Karsten K   Michler Thomas T   Pichlmair Andreas A   Ludwig Christina C   Kuster Bernhard B  

Molecular & cellular proteomics : MCP 20200626 9

As the COVID-19 pandemic continues to spread, thousands of scientists around the globe have changed research direction to understand better how the virus works and to find out how it may be tackled. The number of manuscripts on preprint servers is soaring and peer-reviewed publications using MS-based proteomics are beginning to emerge. To facilitate proteomic research on SARS-CoV-2, the virus that causes COVID-19, this report presents deep-scale proteomes (10,000 proteins; >130,000 peptides) of  ...[more]

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