Proteomics

Dataset Information

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COVID-19 proteome profiling reveals resolution of inflammatory pathways and respiratory distress after DNase treatment


ABSTRACT: Severe COVID-19 can result in pneumonia and acute respiratory failure. Accumulation of mucus in the airways is a hall mark of the disease and can result in hypoxemia. Here, we show that quantitative proteome analysis of the sputum from severe COVID-19 patients reveal high levels of neutrophil extracellular trap(s) (NETs) components, which was confirmed by microscopy. Degrading pulmonary NETs using clinically approved aerosolized recombinant human DNase (rhDNase/Pulmozyme) improved pulmonary function, reversed hypoxemia, and aided in the rapid recovery of severely ill COVID-19 patients. Immunofluorescence and proteome analysis of sputum and blood plasma samples after treatment revealed a marked reduction of NETs and a set of statistically significant proteome changes that indicate local reduction of haemorrhage, plasma leakage and inflammation in the airways, and a reversion of the systemic inflammatory state in the blood plasma. Taken together, the results show that NETs contribute to acute respiratory failure in COVID-19 and that degrading NETs may reduce dependency on external high flow oxygen therapy. Targeting NETs may have significant therapeutic implications in COVID-19 disease and warrants further studies.

INSTRUMENT(S): Q Exactive HF-X

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Blood Plasma, Sputum

DISEASE(S): Covid-19

SUBMITTER: Christofer Karlsson  

LAB HEAD: Johan Malmström

PROVIDER: PXD021197 | Pride | 2021-07-05

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
2020-03-28-decoys-Covid-19_Uniprot200328HUMAN_PANTHER15.0_UP000005640_9606iRTPROCALCONT.fasta Fasta
CK_P2003_182.raw Raw
CK_P2003_185.raw Raw
CK_P2003_242.raw Raw
CK_P2004_001.raw Raw
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Publications

Proteome Profiling of Recombinant DNase Therapy in Reducing NETs and Aiding Recovery in COVID-19 Patients.

Fisher Jane J   Mohanty Tirthankar T   Karlsson Christofer A Q CAQ   Khademi S M Hossein SMH   Malmström Erik E   Frigyesi Attila A   Nordenfelt Pontus P   Malmstrom Johan J   Linder Adam A  

Molecular & cellular proteomics : MCP 20210615


Severe coronavirus disease 2019 (COVID-19) can result in pneumonia and acute respiratory failure. Accumulation of mucus in the airways is a hallmark of the disease and can result in hypoxemia. Here, we show that quantitative proteome analysis of the sputum from severe patients with COVID-19 reveal high levels of neutrophil extracellular trap (NET) components, which was confirmed by microscopy. Extracellular DNA from excessive NET formation can increase sputum viscosity and lead to acute respirat  ...[more]

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