Proteomics

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Multi-omics driven metabolic network reconstruction and analysis of lignocellulosic carbon utilization in Rhodosporidium toruloides

ABSTRACT: Global proteomics datasets to study lignocellulosic carbon utilization in Rhodosporidium Toruloides

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Rhodotorula Toruloides

TISSUE(S): Fungus Form

SUBMITTER: Matthew Monroe  

LAB HEAD: Jon K Magnuson

PROVIDER: PXD022377 | Pride | 2021-09-09

REPOSITORIES: Pride

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Action DRS
Dataset_Replicate_Information.csv Csv
Sporid_Cell_A_40H_1_P_005_A_12Apr18_Merry_18-02-04.mzML.gz Mzml
Sporid_Cell_A_40H_1_P_005_A_12Apr18_Merry_18-02-04.raw Raw
Sporid_Cell_A_40H_1_P_005_A_12Apr18_Merry_18-02-04_msgfplus.mzid.gz Mzid
Sporid_Cell_A_40H_1_P_005_B_12Apr18_Merry_18-02-04.mzML.gz Mzml
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Publications

Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in <i>Rhodosporidium toruloides</i>.

Kim Joonhoon J   Coradetti Samuel T ST   Kim Young-Mo YM   Gao Yuqian Y   Yaegashi Junko J   Zucker Jeremy D JD   Munoz Nathalie N   Zink Erika M EM   Burnum-Johnson Kristin E KE   Baker Scott E SE   Simmons Blake A BA   Skerker Jeffrey M JM   Gladden John M JM   Magnuson Jon K JK  

Frontiers in bioengineering and biotechnology 20210108

An oleaginous yeast <i>Rhodosporidium toruloides</i> is a promising host for converting lignocellulosic biomass to bioproducts and biofuels. In this work, we performed multi-omics analysis of lignocellulosic carbon utilization in <i>R. toruloides</i> and reconstructed the genome-scale metabolic network of <i>R. toruloides</i>. High-quality metabolic network models for model organisms and orthologous protein mapping were used to build a draft metabolic network reconstruction. The reconstruction w  ...[more]

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