Proteomics

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High-throughput proteomic analysis of rectal cancer for prediction of non-complete response after concurrent chemoradiation therapy


ABSTRACT: Colorectal cancer (CRC) is the third most common lethal malignancy in Korea and worldwide. Rectal cancer patients occupy about 30% of CRC patients, and the majority of rectal cancer patients had locally advanced disease at diagnosis. The standard treatment of locally advanced rectal cancer (LARC) is neoadjuvant radiation therapy with concurrent chemotherapy (CCRT) followed by total mesorectal excision (TME). This multidisciplinary team approach improved local tumor control and overall survival of rectal cancer patients. High throughput proteomic analysis and machine learning algorithm identify DUOX2 (dual oxidase 2) as a novel biomarker for prediction of non-complete response after concurrent chemoradiation therapy for rectal cancer.High throughput proteomic analysis and machine learning algorithm identify DUOX2 (dual oxidase 2) as a novel biomarker for prediction of non-complete response after concurrent chemoradiation therapy for rectal cancer.

INSTRUMENT(S): Q Exactive Plus

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Epithelial Cell, Colon

DISEASE(S): Colon Cancer

SUBMITTER: Dohyun Han  

LAB HEAD: Dohyun Han

PROVIDER: PXD023302 | Pride | 2023-03-11

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
20180915_colon_C1.raw Raw
20180915_colon_C2.raw Raw
20180915_colon_C3.raw Raw
20180915_colon_C4.raw Raw
20180915_colon_C5.raw Raw
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Publications

Dual Oxidase 2 (DUOX2) as a Proteomic Biomarker for Predicting Treatment Response to Chemoradiation Therapy for Locally Advanced Rectal Cancer: Using High-Throughput Proteomic Analysis and Machine Learning Algorithm.

Lee Hyebin H   Ryu Han Suk HS   Park Hee Chul HC   Yu Jeong Il JI   Yoo Gyu Sang GS   Choi Changhoon C   Nam Heerim H   Lee Jason Joon Bock JJB   Do In-Gu IG   Han Dohyun D   Ha Sang Yun SY  

International journal of molecular sciences 20221026 21


High-throughput mass-spectrometry-based quantitative proteomic analysis was performed using formalin-fixed, paraffin-embedded (FFPE) biopsy samples obtained before treatment from 13 patients with locally advanced rectal cancer (LARC), who were treated with concurrent chemoradiation therapy (CCRT) followed by surgery. Patients were divided into complete responder (CR) and non-complete responder (nCR) groups. Immunohistochemical (IHC) staining of 79 independent FFPE tissue samples was performed to  ...[more]

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