Proteomics

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Tissue extracellular matrix hydrogels as alternative to Matrigel for culturing gastrointestinal organoid


ABSTRACT: Matrigel, a mouse tumor extracellular matrix (ECM) protein mixture, is an indispensable component of most organoid tissue culture. However, it has limited the utility of organoids for drug development and regenerative medicine due to its tumor-derived origin, batch-to22 batch variation, high cost, and safety issues. Here, we demonstrate that gastrointestinal (GI) tissue-derived ECM hydrogels are a suitable substitute for Matrigel in GI organoid culture. We found that the development and function of GI organoids grown in GI ECM hydrogels are comparable or often superior to those in Matrigel. In addition, GI ECM hydrogels enabled long-term subculture and transplantation of GI organoids by providing GI tissue-mimetic microenvironments. Tissue-specific and age-related ECM profiles of GI ECM hydrogels that affect organoid development were also elucidated through proteomic analysis. Together, our results suggest that ECM hydrogels derived from decellularized GI tissues are an effective alternative to the current gold standard, Matrigel, and produce organoids suitable for GI disease modeling, drug development, and tissue regeneration.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Sus Scrofa Domesticus (domestic Pig)

SUBMITTER: Sung-Hyun Jo  

LAB HEAD: Seung-Woo Cho

PROVIDER: PXD023705 | Pride | 2022-01-31

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
210324_proteinGroups_IEM__A_C_.txt Txt
210401_proteinGroups_EEM.txt Txt
210510_proteinGroups_SEM__A_C_.txt Txt
EEM_1.raw Raw
EEM_2.raw Raw
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Publications

Tissue extracellular matrix hydrogels as alternatives to Matrigel for culturing gastrointestinal organoids.

Kim Suran S   Min Sungjin S   Choi Yi Sun YS   Jo Sung-Hyun SH   Jung Jae Hun JH   Han Kyusun K   Kim Jin J   An Soohwan S   Ji Yong Woo YW   Kim Yun-Gon YG   Cho Seung-Woo SW  

Nature communications 20220330 1


Matrigel, a mouse tumor extracellular matrix protein mixture, is an indispensable component of most organoid tissue culture. However, it has limited the utility of organoids for drug development and regenerative medicine due to its tumor-derived origin, batch-to-batch variation, high cost, and safety issues. Here, we demonstrate that gastrointestinal tissue-derived extracellular matrix hydrogels are suitable substitutes for Matrigel in gastrointestinal organoid culture. We found that the develop  ...[more]

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