Proteomics

Dataset Information

0

Expression of transport proteins in the rete mirabile of European silver and yellow eel


ABSTRACT: This dataset consists of 33 raw MS files, an associated peak list and result file, acquired on an Q Exactive plus mass spectrometer operated in Data Dependent Acquisition mode. The files are associated with a manuscript submitted for publication. Publication title: " Expression of transport proteins in the rete mirabile of European silver and yellow eel " The swimbladder rete mirabile is known for its highly efficient countercurrent concentrating ability, allowing for the generation of hyperbaric oxygen partial pressures in the range of several 10th or even more than 100 atmospheres. The transcapillary exchange between venous and arterial capillaries is often explained by passive diffusion and hydraulic (osmotic) transport. The reported countercurrent concentration of lactate ions, however, raises the possibility that specific transport proteins contribute to the countercurrent concentrating ability of the rete. We therefore analyzed the transcriptome as well as the proteome of rete capillaries of the European eel. The results clearly show the presence of a large number of membrane transport proteins in the transcriptome as well as in the proteome. ATP required to energize ion and metabolite transport can be generated in the aerobic metabolism. A high ROS defense capacity is established in rete endothelial cells, probably connected to the hyperbaric oxygen partial pressures, generated in the rete by back-diffusion of oxygen.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Anguilla Anguilla

TISSUE(S): Organic Molecular Entity, Rete Mirabile

SUBMITTER: Klaus Faserl  

LAB HEAD: Bernd Pelster

PROVIDER: PXD025435 | Pride | 2022-01-14

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Eel_cDNA_20170720.fasta Fasta
Gabriel_Schneebauer_Itraq_HochpH-Fr.msf Msf
Gabriel_Schneebauer_Itraq_HochpH-Fr.pdResult Other
Sample_to_Data_file.txt Txt
checksum.txt Txt
Items per page:
1 - 5 of 29
altmetric image

Publications

Expression of transport proteins in the rete mirabile of european silver and yellow eel.

Schneebauer Gabriel G   Drechsel Victoria V   Dirks Ron R   Faserl Klaus K   Sarg Bettina B   Pelster Bernd B  

BMC genomics 20211202 1


<h4>Background</h4>In physoclist fishes filling of the swimbladder requires acid secretion of gas gland cells to switch on the Root effect and subsequent countercurrent concentration of the initial gas partial pressure increase by back-diffusion of gas molecules in the rete mirabile. It is generally assumed that the rete mirabile functions as a passive exchanger, but a detailed analysis of lactate and water movements in the rete mirabile of the eel revealed that lactate is diffusing back in the  ...[more]

Similar Datasets

2021-11-24 | GSE172092 | GEO
2011-05-06 | GSE29097 | GEO
2021-05-07 | E-MTAB-9175 | biostudies-arrayexpress
2019-03-26 | GSE122117 | GEO
2021-05-22 | GSE174847 | GEO
2011-05-06 | E-GEOD-29097 | biostudies-arrayexpress
2022-11-01 | GSE216502 | GEO
| PRJNA352409 | ENA
2011-03-26 | GSE28174 | GEO
2017-07-01 | GSE18287 | GEO