Proteomics

Dataset Information

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Site-specific N- and O-glycosylation Analysis of Human Plasma Fibronectin


ABSTRACT: Human plasma fibronectin is an adhesive protein that plays a crucial role in wound healing. Many studies had indicated that glycans may mediate the expression and functions of fibronectin, yet a comprehensive understanding of its glycosylation is still missing. Here, we performed a comprehensive N- and O-glycosylation mapping of human plasma fibronectin, and quantified the occurrence of each glycoform in a site-specific manner. Intact N-glycopeptides were enriched by zwitterionic hydrophilic interaction chromatography, and N-glycosites sites were localized by the 18O-labeling method. O-glycopeptide enrichment and O-glycosite identification were achieved by an enzyme-assisted site-specific extraction method. An RP–LC–MS/MS system functionalized with Collision-Induced Dissociation and stepped normalized collision energy (sNCE)-HCD tandem mass was applied to analyze the glycoforms of fibronectin. A total of 6 N-glycosites and 53 O-glycosites were identified, which were occupied by 3842 N-glycoforms and 16 O-glycoforms, respectively. Furthermore, 81.4% of N-glycans were either fucosylated, sialylated, or with both modifications77.31% of N-glycans were sialylated, while O-glycosylation was dominated by the sialyl-T antigen. These site-specific glycosylation patterns on human fibronectin can facilitate functional analyses of fibronectin and therapeutics development.

INSTRUMENT(S): LTQ Orbitrap Elite

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Blood Plasma

SUBMITTER: Ding Liu  

LAB HEAD: Lei Li

PROVIDER: PXD025886 | Pride | 2022-02-17

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Fibronectin_Intact_Nglycan.raw Raw
NectinGIG_noSialidase.raw Raw
Nectin_EXoO.raw Raw
Nectin_Intact_Nglyco_results.xlsx Xlsx
Nectin_O18.xlsx Xlsx
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Publications

Site-Specific N- and O-Glycosylation Analysis of Human Plasma Fibronectin.

Liu Ding D   Wang Shuaishuai S   Zhang Junping J   Xiao Weidong W   Miao Carol H CH   Konkle Barbara A BA   Wan Xiu-Feng XF   Li Lei L  

Frontiers in chemistry 20210615


Human plasma fibronectin is an adhesive protein that plays a crucial role in wound healing. Many studies had indicated that glycans might mediate the expression and functions of fibronectin, yet a comprehensive understanding of its glycosylation is still missing. Here, we performed a comprehensive N- and O-glycosylation mapping of human plasma fibronectin and quantified the occurrence of each glycoform in a site-specific manner. Intact N-glycopeptides were enriched by zwitterionic hydrophilic in  ...[more]

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