Proteomics

Dataset Information

0

Data for the Blood Proteoform Atlas:DS-73:Plasma:Peripheral Blood


ABSTRACT: Human biology is tightly linked to proteins, yet most measurements do not precisely determine their full sequence and post-translational modifications. Here, we present the primary structures of 30,000 unique proteoforms expressed from 1,690 human genes across 21 cell types and plasma from human blood and bone marrow compiled in the Blood Proteoform Atlas (BPA). Our results indicate that while a given protein can be expressed across multiple cell types, the proteoform functions as a more specific indicator of differentiation. These results provide a better biochemical description of protein-level biology expressed through gene transcription and translation. We demonstrate the utility of the BPA by focusing on cell- and proteoform-specific signatures within 58 liver transplant recipients having healthy graft function or undergoing acute organ rejection or dysfunction.

INSTRUMENT(S): Fourier Transform Ion Cyclotron Resonance Mass Spectrometer

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Blood Plasma, Blood

DISEASE(S): Disease Free

SUBMITTER: Michael Hollas  

LAB HEAD: Neil L. Kelleher

PROVIDER: PXD026176 | Pride | 2022-02-03

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
BPA_ALL_20200811_Indexed.tdReport Other
DB_RM_20191002_plasma_F3_01.raw Raw
DB_RM_20191002_plasma_F3_02.raw Raw
DB_RM_20191002_plasma_F4_01.raw Raw
DB_RM_20191002_plasma_F4_02.raw Raw
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Publications


Human biology is tightly linked to proteins, yet most measurements do not precisely determine alternatively spliced sequences or posttranslational modifications. Here, we present the primary structures of ~30,000 unique proteoforms, nearly 10 times more than in previous studies, expressed from 1690 human genes across 21 cell types and plasma from human blood and bone marrow. The results, compiled in the Blood Proteoform Atlas (BPA), indicate that proteoforms better describe protein-level biology  ...[more]

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