Dataset Information

Signalling and recycling endosomes_dataset 03

ABSTRACT: We studied Receptor Tyrosine Kinase signalling from recycling endosomes and how this affected downstream responses. We developed a new method to study signalling in the proximity of recycling endosomes by combining enrichment of biotinylated peptides followed by enrichment of phosphorylated peptides.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Permanent Cell Line Cell

DISEASE(S): Breast Cancer

SUBMITTER: Chiara Francavilla

LAB HEAD: Chiara Francavilla

PROVIDER: PXD028371 | Pride | 2022-11-08

REPOSITORIES: pride

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Dataset's files

Source:

			Action	DRS
	20191129_CF_MPS_HeLaStable_HA-R2b_A2_R11_GFP_STY_Ctr_A_40_01_01.raw	Raw
	20191129_CF_MPS_HeLaStable_HA-R2b_A2_R11_GFP_STY_Ctr_A_40_01_02.raw	Raw
	20191129_CF_MPS_HeLaStable_HA-R2b_A2_R11_GFP_STY_Ctr_A_40_02_01.raw	Raw
	20191129_CF_MPS_HeLaStable_HA-R2b_A2_R11_GFP_STY_Ctr_A_40_02_02.raw	Raw
	20191129_CF_MPS_HeLaStable_HA-R2b_A2_R11_GFP_STY_Ctr_A_40_03_01.raw	Raw

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Publications

Spatially resolved phosphoproteomics reveals fibroblast growth factor receptor recycling-driven regulation of autophagy and survival.

Watson Joanne J Ferguson Harriet R HR Brady Rosie M RM Ferguson Jennifer J Fullwood Paul P Mo Hanyi H Bexley Katherine H KH Knight David D Howell Gareth G Schwartz Jean-Marc JM Smith Michael P MP Francavilla Chiara C

Nature communications 20221103 1

Receptor Tyrosine Kinase (RTK) endocytosis-dependent signalling drives cell proliferation and motility during development and adult homeostasis, but is dysregulated in diseases, including cancer. The recruitment of RTK signalling partners during endocytosis, specifically during recycling to the plasma membrane, is still unknown. Focusing on Fibroblast Growth Factor Receptor 2b (FGFR2b) recycling, we reveal FGFR signalling partners proximal to recycling endosomes by developing a Spatially Resolve ...[more]

PMID: 36329028

Similar Datasets

Project description:Through substitution mapping studies, we previously identified that a <330kb region from a rat strain with no renal pathology (the Lewis rat), which when introgressed onto the genetic background of a rat with renal disease (the Dahl Salt-sensitive (S) rat), caused an increase rather than the expected decrease in proteinuria. The purpose of this study was to prioritize a candidate gene and further delineate the mechanism underlying the observed increased in proteinuria. A higher level of proteinuria independent of dietary salt was observed in the congenic rat at a very young age (50-52 day old). The critical congenic segment was further mapped to <42.5kb containing a single candidate gene, rififylin. Rififylin was expressed 1.59 fold higher in the congenic strain compared with S. Overexpression of rififylin is known to delay recycling of endosomes. Renal transcriptome analysis indicated that Atp1a1 one of the most highly differentially expressed genes. Atp1a1 was 5.33 fold higher in the congenic strain compared with S. The protein product of Atp1a1, the alpha subunit of Na+K+ATPase, was also significantly higher in the endosomes of proximal tubules from the congenic strain compared with S. To determine whether the higher amounts of this protein in the endosomes is due to a delay in recycling of endosomes caused by the overexpression of rififylin in the congenic strain, recycling of exogenously labeled-transferrin by single cell cultures of proximal tubules was monitored by confocal microscopy. Recycling of transferrin was significantly delayed in the congenic strain compared with S. These results suggest that impaired endosomal recycling in the proximal tubules from the congenic strain caused by the overexpression of rififylin is a novel molecular mechanism linked to the observed increase in proteinuria of the congenic strain. Three male S control and 3 male congenic S.LEW(10)x12x2x3x5 rats born on the same day were selected, weaned at 30 days of age, and caged with 1 congenic and 1 S rat per cage. They were raised on a low-salt (0.3%) diet (Harlan Teklad diet TD 7034; Harlan–Sprague-Dawley) and sacrificed at 53 days of age and total RNAs were isolated from the kidney. The isolated RNA from each animal was used for the cRNA preparation. cRNA was prepared and fragmented as suggested by Affymetrix technical manual, and simultaneously hybridized (15 µg adjusted cRNA for each chip) to Rat Expression Array 230 2.0 (3' IVT Expression Analysis). Statistical analyses of the microarray data were performed with BH adjustment using R statistical package (version 2.8.1).