Dataset Information

A chemoproteomics approach to profile phospholipase D-derived phosphatidyl alcohol interactions

ABSTRACT: Alcohol consumption leads to formation of phosphatidylethanol (PEth) via the transphosphatidylation activity of phospholipase D (PLD) enzymes. Though this non-natural phospholipid routinely serves as a biomarker of chronic alcoholism, its pathophysiological roles remain unknown. We use a minimalist diazirene alkyne alcohol as an ethanol surrogate to generate clickable, photoaffinity lipid reporters of PEth localization and lipid–protein interactions via PLD-mediated transphosphatidylation. Using click chemistry tagging, enrichment, and proteomics analysis, we identified the single-pass transmembrane protein basigin/CD147 as a high-confidence interaction partner of this photoaffinity lipid reporter. Here we perform in-cell photocrosslinking, followed by anti-FLAG affinity enrichment of FLAG-tagged basigin, to map the crosslinking sites and determine that the PAL lipid crosslinks to a C-terminal peptide of basigin-FLAG. This study provides a view of the molecular interactions of phosphatidyl alcohols and points to future work to connect such interactions to potential pathophysiological roles of PEth.

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Epithelial Cell, Kidney

SUBMITTER: Christina Woo

LAB HEAD: Christina May Woo

PROVIDER: PXD029749 | Pride | 2024-01-04

REPOSITORIES: Pride

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Dataset's files

Source:

			Action	DRS
	211021L-BY116_518_CF-trypsin_13-iso-2OH.mzML	Mzml
	211021L-BY116_518_CF-trypsin_13-iso-2OH.mzid.gz	Mzid
	211021LSHSAM09402-ZL518_trypsin.raw	Raw

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Publications

A Chemoproteomics Approach to Profile Phospholipase D-Derived Phosphatidyl Alcohol Interactions.

Yu Weizhi W Lin Zhi Z Woo Christina M CM Baskin Jeremy M JM

ACS chemical biology 20211215 12

Alcohol consumption leads to formation of phosphatidylethanol (PEth) via the transphosphatidylation activity of phospholipase D (PLD) enzymes. Though this non-natural phospholipid routinely serves as a biomarker of chronic alcoholism, its pathophysiological roles remain unknown. We use a minimalist diazirine alkyne alcohol as an ethanol surrogate to generate clickable, photoaffinity lipid reporters of PEth localization and lipid-protein interactions via PLD-mediated transphosphatidylation. We us ...[more]

PMID: 34908404

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