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Reanalysis of dataset PXD005780: “Relating human gut metagenome and metaproteome”

ABSTRACT: This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD005780. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This reanalysis work is part of the MetaPUF (MetaProteomics with Unknown Function) project, which is a collaboration between EMBL-EBI and the University of Luxembourg. The dataset was selected with the following conditions: 1. It has been made publicly available in PRIDE and focuses on metaproteomics of the human gut; 2. The corresponding metagenomics assemblies were also available from ENA (European Nucleotide Archive) or MGnify. The processed peptide reports for each sample are available to view at the contig level on the MGnify website. In total, the reanalysis identified 15,417 unique proteins from 15 samples.

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Human Gut Metagenome

TISSUE(S): Feces

SUBMITTER: Shengbo Wang

LAB HEAD: Juan Antonio Vizcaino

PROVIDER: PXD032303 | Pride | 2022-05-04

REPOSITORIES: Pride

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Json Xml

Dataset's files

Source:

			Action	DRS
	Experimental_design_extended_PXD005780-updated.xlsx	Xlsx
	S13-metadata.json	Other
	S13.mgf	Mgf
	S13.mgf.cui	Mgf
	S13.raw	Raw

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