Proteomics

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The E3 ubiquitin ligase adaptor cereblon targets the C-terminal cyclic imide degron


ABSTRACT: The E3 ligase factor cereblon (CRBN) is a target of thalidomide and lenalidomide, which are therapeutic agents used in the treatment of hematopoietic malignancies and as ligands for targeted protein degradation. These agents are proposed to mimic a naturally occurring degron; however, the structural motif recognized by the thalidomide-binding domain of CRBN is unknown. Here, we report that C-terminal cyclic imides, post-translational modifications that arise from intramolecular cyclization of glutamine or asparagine residues, are degrons for CRBN. Dipeptides bearing the cyclic imide degron are substitutes for thalidomide when embedded within bifunctional small molecule degraders. Installation of the degron to the C-terminus of proteins induces CRBN-dependent ubiquitylation and degradation in vitro and in cells. C-Terminal cyclic imides are previously underappreciated post-translational modifications found throughout the human proteome that are endogenously recognized and removed by CRBN. The discovery of the cyclic imide degron defines a novel regulatory process controlled by these modifications, which may impact the development of therapeutic agents that engage CRBN.

INSTRUMENT(S): Orbitrap Fusion Lumos, LTQ Orbitrap Velos

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Erythrocyte, Cell Suspension Culture, Blood Cell, Cell Culture, Blood

SUBMITTER: Christina Woo  

LAB HEAD: Christina Woo

PROVIDER: PXD034248 | Pride | 2022-07-28

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
ACTBstd_SIM.raw Raw
ACTBstd_fullscan.raw Raw
HBBstd-SIM.raw Raw
HBBstd-fullscan.raw Raw
HEK293T_SIM_DMSO1.raw Raw
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Publications

The E3 ligase adapter cereblon targets the C-terminal cyclic imide degron.

Ichikawa Saki S   Flaxman Hope A HA   Xu Wenqing W   Vallavoju Nandini N   Lloyd Hannah C HC   Wang Binyou B   Shen Dacheng D   Pratt Matthew R MR   Woo Christina M CM  

Nature 20221019 7933


The ubiquitin E3 ligase substrate adapter cereblon (CRBN) is a target of thalidomide and lenalidomide<sup>1</sup>, therapeutic agents used in the treatment of haematopoietic malignancies<sup>2-4</sup> and as ligands for targeted protein degradation<sup>5-7</sup>. These agents are proposed to mimic a naturally occurring degron; however, the structural motif recognized by the thalidomide-binding domain of CRBN remains unknown. Here we report that C-terminal cyclic imides, post-translational modifi  ...[more]

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