Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Integrated proteomics analysis of the utilization of glucose by Synechococcus BL107

ABSTRACT: We compared changes, induced by the addition of 100 nM and 5 mM glucose in the proteome ofseveral strains of Synechococcus and Prochlorococcus, growing either under standard light conditions or darkness. Our results demonstrate that glucose is being metabolized by thesecyanobacteria, using mainly the oxidative pentoses pathway, while no evidence was found for the involvement of the Entner-Doudoroff pathway in this process. We observed differences in the metabolic strategies for glucose utilization, both between genera, and between Prochlorococcus MED4 and SS120 strains, which might be related to their specific adaptations to the environment. Our results also suggest that marine cyanobacteria can detect nanomolar glucose concentrations in the environment and that glucose might be used to sustain metabolism under darkness.

INSTRUMENT(S): Orbitrap Fusion

ORGANISM(S): Synechococcus Sp. Bl107

TISSUE(S): Photosynthetic Cell

SUBMITTER: Guadalupe Gomez-Baena

LAB HEAD: José Manuel García Fernández

PROVIDER: PXD035395 | Pride | 2023-01-05

REPOSITORIES: Pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	BL107nofilter.mzML	Mzml
	BL107nofilter.mzid.gz	Mzid
	BL107nofilter_al-ma.mzML	Mzml
	BL107nofilter_al-ma.mzid.gz	Mzid
	LupeGomez_sol53-18_10_26092018_20180929154156.raw	Raw

Items per page:

1 - 5 of 22

Similar Datasets

Proteomic analysis of glucose utilization by Prochlorococcus SS120

Project description:We compared changes, induced by the addition of 100 nM and 5 mM glucose in the proteome and metabolome complements in several strains of Synechococcus and Prochlorococcus, growing either under standard light conditions or darkness. Our results demonstrate that glucose is being metabolized by these cyanobacteria, using mainly the oxidative pentoses pathway, while no evidence was found for the involvement of the Entner-Doudoroff pathway in this process. We observed differences in the metabolic strategies for glucose utilization, both between genera, and between Prochlorococcus MED4 and SS120 strains, which might be related to their specific adaptations to the environment. Our results suggest that marine cyanobacteria can detect nanomolar glucose concentrations in the environment and that glucose might be used to sustain metabolism under darkness.

2023-01-05 | PXD035660 | Pride

Proteomic analysis of glucose utilization by Prochlorococcus MED4

Project description:We compared changes, induced by the addition of 100 nM and 5 mM glucose in the proteome and metabolome complements in several strains of Synechococcus and Prochlorococcus, growing either under standard light conditions or darkness. Our results demonstrate that glucose is being metabolized by these cyanobacteria, using mainly the oxidative pentoses pathway, while no evidence was found for the involvement of the Entner-Doudoroff pathway in this process. We observed differences in the metabolic strategies for glucose utilization, both between genera, and between Prochlorococcus MED4 and SS120 strains, which might be related to their specific adaptations to the environment. Our results also suggest that marine cyanobacteria can detect nanomolar glucose concentrations in the environment and that glucose might be used to sustain metabolism under darkness.

2023-01-05 | PXD035402 | Pride

Proteomic analysis of glucose utilization by marine Synechococcus WH7803

Project description:We compared changes, induced by the addition of 100 nM and 5 mM glucose in the proteome and metabolome complements in several strains of Synechococcus and Prochlorococcus, growing either under standard light conditions or darkness. Our results demonstrate that glucose is being metabolized by these cyanobacteria, using mainly the oxidative pentoses pathway, while no evidence was found for the involvement of the Entner-Doudoroff pathway in this process. We observed differences in the metabolic strategies for glucose utilization, both between genera, and between Prochlorococcus MED4 and SS120 strains, which might be related to their specific adaptations to the environment. Our results also suggest that marine cyanobacteria can detect nanomolar glucose concentrations in the environment and that glucose might be used to sustain metabolism under darkness.

2023-01-05 | PXD035481 | Pride

Proteomic analysis of glucose utilization by Synechococcus WH8102

Project description:We compared changes, induced by the addition of 100 nM and 5 mM glucose in the proteome and metabolome complements in several strains of Synechococcus and Prochlorococcus, growing either under standard light conditions or darkness. Our results demonstrate that glucose is being metabolized by these cyanobacteria, using mainly the oxidative pentoses pathway, while no evidence was found for the involvement of the Entner-Doudoroff pathway in this process. We observed differences in the metabolic strategies for glucose utilization, both between genera, and between Prochlorococcus MED4 and SS120 strains, which might be related to their specific adaptations to the environment. Our results also suggest that marine cyanobacteria can detect nanomolar glucose concentrations in the environment and that glucose might be used to sustain metabolism under darkness.

2023-01-05 | PXD035483 | Pride

Exoproteomes of marine cyanobacteria grown under different regimes to detect their pili production; analysed by LC-MS/MS

Project description:Exoproteomes generated from Synechococcus sp. WH7803 and Prochlorococcus sp. MIT9313 cultures grown under different nutrient, light and temperature conditions. The aim was to see how the production of the pili were affected. Exoproteomes of marine Prochlorococcus under different growth regimes analysed by LC-MS/MS

2021-02-24 | PXD018395 | Pride

Exoproteomes of marine cyanobacteria grown under different regimes to detect their pili production; analysed by LC-MS/MS

Project description:Exoproteomes generated from Synechococcus sp. WH7803 and Prochlorococcus sp. MIT9313 cultures grown under different nutrient, light and temperature conditions. The aim was to see how the production of the pili were affected. Exoproteomes of marine Synechococcus under different nutrient limitations analysed by LC-MS/MS

2021-02-24 | PXD018394 | Pride

Exoproteomes of marine cyanobacteria grown under different regimes to detect their pili production; analysed by LC-MS/MS

Project description:Exoproteomes generated from Synechococcus sp. WH7803 and Prochlorococcus sp. MIT9313 cultures grown under different nutrient, light and temperature conditions. The aim was to see how the production of the pili were affected. Exoproteomes of marine Synechococcus under different nutrient regimes analysed by LC-MS/MS

2021-02-24 | PXD018396 | Pride

Exoproteomes of marine cyanobacteria grown under different regimes to detect their pili production; analysed by LC-MS/MS

Project description:Exoproteomes generated from Synechococcus sp. WH7803 and Prochlorococcus sp. MIT9313 cultures grown under different nutrient, light and temperature conditions. The aim was to see how the production of the pili were affected. Exoproteomes of marine Synechococcus under different light regimes analysed by LC-MS/MS

2021-02-24 | PXD018524 | Pride

Quantitative proteomics shows extensive remodelling induced by N limitation in Prochlorococcus sp. SS120 C4PR_LIV

Project description:Prochlorococcus is the most abundant photosynthetic organism on Earth, contributing significantly to the global primary production and playing a prominent role in biogeochemical cycles. Prochlorococcus requires the capability to accommodate to environmental changes in order to proliferate in oligotrophic oceans, in particular regarding nitrogen availability. A precise knowledge of the composition and changes of the proteome is necessary to gain fundamental insights into such response. Here we study the effects of extreme nitrogen limitation, a feature of the oligotrophic oceans inhabited by this organism.

2017-05-03 | PXD005745 | Pride

Shotgun proteomic analysis of the marine cyanobacterium Prochlorococcus sp. MED4 exposed to titanium dioxide nanoparticles

Project description:Cell- and extracellular proteomes obtained from Prochlorococcus sp. MED4 cultures exposed to nTiO2 were analysed to investigate any molecular features of toxicity.

2021-09-10 | PXD024726 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data