Proteomics

Dataset Information

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Profiling of Serum N-glycosylation in Non-small-cell Lung Cancer


ABSTRACT: Aberrant serum N-glycan profiles have been observed in multiple cancers including non-small-cell lung cancer (NSCLC), yet the potential of N-glycans in the early diagnosis of NSCLC remains to be determined. Here, serum N-glycan profiles of 275 NSCLC patients and 309 healthy controls were characterized by MALDI-TOF-MS. The levels of serum N-glycans and N-glycosylation patterns were compared between NSCLC and control groups. In addition, a panel of N-glycan biomarkers for NSCLC diagnosis was established and validated using machine learning algorithms. As a result, a total of 54 N-glycan structures were identified in human serum. Compared with healthy controls, 29 serum N-glycans were up- or down-regulated in NSCLC patients. N-glycan abundance in different histological types or clinical stages of NSCLC presented differentiated changes. Furthermore, an optimal biomarker panel of 8 N-glycans was constructed based on logistic regression, with an AUC of 0.86 in the validation set. Notably, this model also showed a desirable capacity in distinguishing early-stage patients from healthy controls (AUC = 0.88). In conclusion, our work highlights the abnormal N-glycan profiles in NSCLC and provides supports for the promising potential of N-glycan panels in clinical NSCLC detection.

INSTRUMENT(S): autoflex

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Blood Cell, Blood Serum

DISEASE(S): Non-small Cell Lung Carcinoma

SUBMITTER: Liming Cheng  

LAB HEAD: Liming Cheng

PROVIDER: PXD040883 | Pride | 2023-11-23

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
20220118HealthyP21_1.txt Txt
20220118HealthyP21_2.txt Txt
20220118HealthyP21_3.txt Txt
20220118HealthyP22_1.txt Txt
20220118HealthyP22_2.txt Txt
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Publications

Comprehensive serum N-glycan profiling identifies a biomarker panel for early diagnosis of non-small-cell lung cancer.

Wang Yi Y   Liu Si S   Li Jiaoyuan J   Yin Tongxin T   Liu Yuanyuan Y   Wang Qiankun Q   Liu Xin X   Cheng Liming L  

Proteomics 20230720 20


Aberrant serum N-glycan profiles have been observed in multiple cancers including non-small-cell lung cancer (NSCLC), yet the potential of N-glycans in the early diagnosis of NSCLC remains to be determined. In this study, serum N-glycan profiles of 275 NSCLC patients and 309 healthy controls were characterized by MALDI-TOF-MS. The levels of serum N-glycans and N-glycosylation patterns were compared between NSCLC and control groups. In addition, a panel of N-glycan biomarkers for NSCLC diagnosis  ...[more]

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