Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Proteomic analysis of livers from the European flounder Platichthys flesus from Seine estuary, following the fire of the Lubrizol and NL-Logistique plants.

ABSTRACT: Proteomics of livers from Platichthys flesus after encagement in the Seine estuary at day 15 and day 30 after the fire of the Lubrizol and NL-logistique plants in Rouen, France, and in a control estuary for describing key molecular players in response to industrial pollutants.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Platichthys Flesus

TISSUE(S): Liver

SUBMITTER: Jean ARMENGAUD

LAB HEAD: Jean Armengaud

PROVIDER: PXD043653 | Pride | 2024-05-02

REPOSITORIES: pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	F217156.dat	Other
	F217156_p0.05.mzid.gz	Mzid
	F217158.dat	Other
	F217158_p0.05.mzid.gz	Mzid
	F217160.dat	Other

Items per page:

1 - 5 of 161

Publications

Relevance of flounder caging and proteomics to explore the impact of a major industrial accident caused by fire on the Seine estuarine water quality.

Laurent Jennifer J Diop Mamadou M Amara Rachid R Fisson Cédric C Armengaud Jean J Labadie Pierre P Budzinski Hélène H Couteau Jérôme J Maillet Géraldine G Le Floch Stéphane S Laroche Jean J Pichereau Vianney V

Marine pollution bulletin 20240223

On September 26th 2019, a major fire occurred in the Lubrizol factory located near the Seine estuary, in Rouen-France. Juvenile flounders were captured in the Canche estuary (a reference system) and caged one month in the Canche and in the Seine downstream the accident site. No significant increases of PAHs, PCBs and PFAS was detected in Seine vs Canche sediments after the accident, but a significant increase of dioxins and furans was observed in water and sewage sludge in the Rouen wastewater t ...[more]

PMID: 38401391

Similar Datasets

Proteomic analysis of livers from the European flounder Platichthys flesus from various french estuaries.

Project description:Proteomics of livers from Platichthys flesus after encagement in different estuarine sites for describing key molecular players in response to environmental stresses.

2023-05-21 | PXD030900 | Pride

Proteomic analysis of livers from the European flounder Platichthys flesus

Project description:Proteomics of livers from Platichthys flesus caught in the Canche estuary but having undergone a 1-month encagement in three estuarine sites for describing molecular players in response to encagement and environmental stresses.

2020-02-25 | PXD013684 | Pride

Proteomic analysis of livers from the European flounder Platichthys flesus from several french estuaries.

Project description:Proteomics of Platichthys flesus livers after sampling different estuarine sites to describe key proteins in response to environmental stresses.

2024-11-06 | PXD045611 | Pride

Transcriptome sequencing of two Lake Baikal endemic (Eulimnogammarus verrucosus and E. cyaneus) and one Holarctic (Gammarus lacustris) transcriptome species from the Baikal region subjected to different stressors: quantification by reduced assemblies

Project description:The project aims at describing the transcriptome composition and differential expression of genes in response to different stressors (elevated temperature, heavy metals (cadmium) and organic pollutants (phenanthrene)).

2019-05-23 | GSE129069 | GEO

2019-05-24 | GSE122811 | GEO

Expression data of the livers of male C57Bl6/N mice after i.p. injection of paracetamol (APAP)

Project description:Male C57BL6/N mice were obtained from Janvier Labs (France). Mice were starved overnight before APAP administration and were fed ad libitum afterward. A single dose of 300 mg APAP/kg b.w. was intraperitoneally injected in warm phosphate-buffered saline (PBS; Table 3). The used APAP was obtained from Sigma-Aldrich (A7085-500G, Germany). The mice were sacrificed at 1, 6, and 12 hours, and on days 1, 2, 4, 6, and 8 after APAP administration. Expression data of the livers of male C57Bl6/N mice after intoxication with paracetamol (APAP)

2021-06-30 | GSE167032 | GEO

Calibration of a custom designed microarray for European Fire Salamander

Project description:A custom 8x60 k expression microarray for larvae of European fire salamander (Salamandra salamandra) was designed based on transcriptome sequencing. It is known the fact, that oligonucleotide probes differ in the binding behavior towards their target sequences. Therefore, we performed a calibration of our microarray where we assessed the binding behavior of the individual probes empirically. This information was used to normalize gene expression data measurements with the same microarray in another experiment. Please refer to the accompanying publication (Czypionka et al. 2015." Ecological transcriptomics – a non-lethal sampling approach for endangered fire salamanders" Methods in Ecology and Evolution) for more information.

2015-06-20 | GSE70055 | GEO

Transcriptomic profiling of male European eel (Anguilla anguilla) livers at sexual maturity

Project description:Gene expression analyses have been performed on liver tissue of sexually mature and immature males using microarrays. 60 eels were transferred to two independent temperature controlled recirculation water units connected to two 500 L cylindro-conical tanks (30 fish per tank) where the fish were acclimated to seawater (35 PSU salinity) over a 2 week period.Eel males in one of the seawater units were injected intramuscularly every week over a 140 day period with 2000 IU hCG/kg (human chorionic gonadotropin, Sigma–Aldrich Chemical) dissolved in 0.9% saline to induce sexual maturation. Eel males in the other recirculation unit were injected weekly over the same period with 0.9% NaCl (vehicle).At the end of the experiment, eels were anesthetized in a solution of 0.1mg/L tricaine methanesulfonate (MS-222, Sigma Aldrich) and blood samples collected into heparinized syringes. Tissues (brain, liver and gonads) were collected from sexually immature (n=12) and sexually mature males (n=12).RNeasy Mini Kit (Qiagen) was used to extract RNA from the livers. Tissue samples were pooled and, therefore, each of the biological replicates (n= 4 sexually immature, n=4 sexually mature) contains tissue from three fish. Total RNA concentration was determined using the Nanodrop ND-100 spectrophotometer (NanoDrop Technologies) and sample integrity was assessed using an Agilent 2100 Bioanalyzer (Agilent Technologies). Microarray analysis was conducted using an European eel-specific array consisting of a total of 14,913 probes based on a large collection of high-throughput transcriptomic sequences (Pujolar et al. 2012). Probe sequences and further details on the microarray platform can be found on the GEO database under accession number GPL15124. Data was normalized using a quantile normalization procedure using R (http://www.r-project.org)

2015-07-31 | GSE64067 | GEO

Comparison of gene expression profiles of Pten, Keap1 and Nrf2 knockout mouse livers.

Project description:Whole livers were collected from mice at the age of day 15 (P15). Total RNA was purified using Isogen.

2013-12-31 | GSE50575 | GEO

Expression data from actinic lentigines in European volunteers

Project description:Actinic lentigines (AL) are very common hyperpigmented lesions that develop on chronically sun-exposed skin and represent a visible sign of skin ageing. In this study, a homogeneous group of advanced AL lesions was selected using epiluminescence imaging and pigmented pattern scoring. Gene expression profiling was performed on AL compared with adjacent non lesional (NL) skin.

2022-10-14 | GSE192564 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data