Dataset Information

Tandem mass spectrometry proteotyping of extremophiles sampled from high-altitude Andean lakes

ABSTRACT: The proteome of the SS13 isolate assigned to the Chromatiaceae family was assessed by shotgun proteomics using a pan-proteomics database for the genus Rheinheimera and a whole genome sequencing -derived database.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Unclassified Chromatiaceae

SUBMITTER: Jean ARMENGAUD

LAB HEAD: Jean Armengaud

PROVIDER: PXD044759 | Pride | 2024-05-02

REPOSITORIES: Pride

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Publications

Exploring Andean High-Altitude Lake Extremophiles through Advanced Proteotyping.

Runzheimer Katharina K Lozano Clément C Boy Diana D Boy Jens J Godoy Roberto R Matus Francisco J FJ Engel Denise D Pavletic Bruno B Leuko Stefan S Armengaud Jean J Moeller Ralf R

Journal of proteome research 20240220 3

Quickly identifying and characterizing isolates from extreme environments is currently challenging while very important to explore the Earth's biodiversity. As these isolates may, in principle, be distantly related to known species, techniques are needed to reliably identify the branch of life to which they belong. Proteotyping these environmental isolates by tandem mass spectrometry offers a rapid and cost-effective option for their identification using their peptide profiles. In this study, we ...[more]

PMID: 38377575

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			Action	DRS
	DB_CL_SS13_Rheinheimera__SS13.fasta	Fasta
	DB_CL_SS13_genome_01.fasta	Fasta
	F484198.dat	Other
	F484198_p0.05.mzid.gz	Mzid
	F484206.dat	Other