Proteomics

Dataset Information

0

Shotgun proteomics on clade II N2O-reducer enrichments


ABSTRACT: The majority of potent greenhouse gas nitrous oxide (N2O) emissions originate from microbially mediated reactions. The enzyme N2O reductase is the only known biological N2O sink and has evolved in two phylogenetically distinct lineages (clades I and II). Clade II is of particular interest for biotechnology as it is often associated with non-denitrifying N2O reducers. In this study, Laureni et al. investigated the environmental conditions that select for clade II. To do so, we enriched two N2O-respiring communities at low dilution rates, under both electron donor (acetate) and electron acceptor (N2O) limitations, in order to assess the impact of substrate affinity and N2O cytotoxicity on community assembly. We used a combination of genome-resolved metagenomics and shotgun metaproteomics to identify the taxonomy and metabolic potential of the steady-state community members. Corresponding author: Michele Laureni, contact: m.laureni@tudelft.nl

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Escherichia Coli

SUBMITTER: Martin Pabst  

LAB HEAD: Martin Pabst

PROVIDER: PXD047071 | Pride | 2025-01-18

REPOSITORIES: pride

Dataset's files

Source:
Action DRS
FCR1224_bins_merged_A_B.fasta Fasta
FCR3224_bins_merged_C_D.fasta Fasta
MP_ML12072019_SampleA_DDA01.raw Raw
MP_ML12072019_SampleA_DDA01_20190712203230.raw Raw
MP_ML12072019_SampleB_DDA01.raw Raw
Items per page:
1 - 5 of 18

Similar Datasets

| PRJNA1054980 | ENA
2022-08-30 | PXD009805 | Pride
2023-03-16 | E-MTAB-12725 | biostudies-arrayexpress
2024-10-06 | PXD053214 | Pride
2016-11-16 | GSE85362 | GEO
2010-08-05 | E-GEOD-23422 | biostudies-arrayexpress
| PRJNA910121 | ENA
2010-11-26 | E-GEOD-24582 | biostudies-arrayexpress
2020-01-07 | GSE142804 | GEO
2020-01-07 | GSE142805 | GEO