Proteomics

Dataset Information

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Characterization of a lipid-based jumbo phage compartment as a hub for early phage infection


ABSTRACT: Viral genomes are most vulnerable to cellular defenses at the start of the infection. A family of jumbo phages related to phage ΦKZ, which infects Pseudomonas aeruginosa, assembles a protein-based phage nucleus to protect replicating phage DNA, but how it is protected prior to phage nucleus assembly is unclear. We find that host proteins related to membrane and lipid biology interact with injected phage protein, clustering in an early phage infection (EPI) vesicle. The injected virion RNA polymerase (vRNAP) executes early gene expression until phage genome separation from the vRNAP and the EPI vesicle, moving into the nascent proteinaceous phage nucleus. Enzymes involved in DNA replication and CRISPR/restriction immune nucleases are excluded by the EPI vesicle. We propose that the EPI vesicle is rapidly constructed with injected phage proteins, phage DNA, host lipids, and host membrane proteins to enable genome protection, early transcription, localized translation, and to ensure faithful genome transfer to the proteinaceous nucleus.

INSTRUMENT(S): Orbitrap Exploris 480

ORGANISM(S): Pseudomonas Phage Phikz Pseudomonas Aeruginosa Pao1-ve2

SUBMITTER: Danielle Swaney  

LAB HEAD: Danielle Swaney

PROVIDER: PXD050275 | Pride | 2024-11-26

REPOSITORIES: pride

Dataset's files

Source:
Action DRS
2023-09-29-decoys-PA01_phikz.fasta.fas Fasta
SampleAnnotations.tsv.txt Txt
TimeCourseSearchResults.zip Other
ex013477.raw Raw
ex013478.raw Raw
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Publications

Characterization of a lipid-based jumbo phage compartment as a hub for early phage infection.

Mozumdar Deepto D   Fossati Andrea A   Stevenson Erica E   Guan Jingwen J   Nieweglowska Eliza E   Rao Sanjana S   Agard David D   Swaney Danielle L DL   Bondy-Denomy Joseph J  

Cell host & microbe 20240612 7


Viral genomes are most vulnerable to cellular defenses at the start of the infection. A family of jumbo phages related to phage ΦKZ, which infects Pseudomonas aeruginosa, assembles a protein-based phage nucleus to protect replicating phage DNA, but how it is protected prior to phage nucleus assembly is unclear. We find that host proteins related to membrane and lipid biology interact with injected phage protein, clustering in an early phage infection (EPI) vesicle. The injected virion RNA polyme  ...[more]

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