Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Planotetraspora phitsanulokensis strain:NBRC 104273

ABSTRACT: Planotetraspora phitsanulokensis NBRC 104273 genome sequencing project

PROVIDER: PRJDB10044 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	BOOP01.dat.gz	Other
	BOOP01.fasta.gz	Fasta.gz
	BOOP01.master.dat	Other

Items per page:

1 - 4 of 4

Similar Datasets

Planotetraspora thailandica strain:NBRC 104271

Project description:Planotetraspora thailandica NBRC 104271 genome sequencing project

| PRJDB10046 | ENA

Planotetraspora silvatica strain:NBRC 100141

Project description:Planotetraspora silvatica NBRC 100141 genome sequencing project

| PRJDB10045 | ENA

Planotetraspora kaengkrachanensis strain:NBRC 104272

Project description:Planotetraspora kaengkrachanensis NBRC 104272 genome sequencing project

| PRJDB10000 | ENA

Planotetraspora mira strain:NBRC 15435

Project description:Planotetraspora mira NBRC 15435 genome sequencing project

| PRJDB10043 | ENA

Planotetraspora

Project description:Planotetraspora sp. overview

| PRJNA1117142 | ENA

Planotetraspora sp. GP83

Project description:Planotetraspora sp. GP83 Genome sequencing

| PRJNA1115260 | ENA

Expression analysis of Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant

Project description:Investigation of whole genome gene expression level changes in a Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant, compared to the wild-type strain.

2021-07-16 | GSE41775 | GEO

Transcriptome analysis of Bacillus subtilis NBRC 16449 grown on surface of boiled soybeans under the similar condition to production of Japanese traditional soybean-fermented food "natto"

Project description:Purpose:The goals of this study are to clarify the B. subtilis NBRC 16449 response to soybeans. Methods: B. subtilis NBRC 16449 cells were aerobically cultured in liquid LB, LB solidified with agar, or on surface of boiled soybeans to logarithmic growth phase. Total RNAs were extracted from bacterial cells by Hot-Phenol method. Samples for RNA-seq were prepared according to Illmina protocol available from the manufacture. The sequence reads that passed quality filters were analyzed at the transcript isoform level with bowtie v0.11.2. Results: Using an optimized data analysis workflow, we mapped around 15 million sequence reads per sample to the whole genome of B. subtilis BEST195 and identified 4271 transcripts in B. subtilis NBRC 16449 with Bowtie aligner. Read count per genome was extracted from known gene annotations with HTSeq program. Compared the transcriptomes of B. subtilis NBRC 16449 grown on LB solidified with agar to that grown on surface of boiled soybeans, about 5% of genes showed the different expression levels.

2020-11-02 | GSE109523 | GEO

Planotetraspora sp. A-T 1434

Project description:Planotetraspora sp. A-T 1434 Genome sequencing and assembly

| PRJNA880997 | ENA

Microbispora amethystogenes strain:NBRC 101907

Project description:Microbispora amethystogenes NBRC 101907 genome sequencing project

| PRJDB10020 | ENA