Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sulfitobacter pacificus

ABSTRACT: De novo sequencing and analysis for Strain NBRC 109915 of Sulfitobacter pacificus

PROVIDER: PRJDB10231 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	DRR237662_1.fastq.gz	Fastqsanger.gz
	DRR237662_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Gambierdiscus pacificus isolate:MUR4

Project description:Gambierdiscus pacificus de novo Transcriptome

| PRJNA561774 | ENA

Lizard feeding enhances Ixodes pacificus vector competence

Project description:Ixodes pacificus, the vector of Borrelia burgdorferi (Bb) on the west coast, feeds on a variety of hosts including rodents, birds, and lizards. While rodents are reservoirs for Bb and can infect juvenile ticks, lizards are Bb-refractory. Despite the range of bloodmeals for I. pacificus, it is undetermined how larval host bloodmeal identity may affect future nymphal vector competence. Here, we conducted a transcriptome analysis on I. pacificus to determine whether and through what mechanisms host bloodmeal history affects vector competency of I. pacificus for the Lyme disease pathogen.

2021-04-27 | GSE173109 | GEO

Immune response of germline-ablated P. pacificus exposed to S. marcescens

2012-04-18 | GSE37337 | GEO

Histone modification profile of Pristionchus pacificus

Project description:Pristionchus pacificus has emerged as a valuable model system for comparative and evolutionary-developmental biology (evo-devo) studies alongside the classic model nematode C. elegans. Previous studies have identified a lack of conservation of genetic networks underlying conserved traits, referred to as developmental systems drift. However, the conservation – or lack thereof – of epigenetic pathways which regulate development have not been investigated. In the manuscript associated with this study, we present an “epigenetic toolkit” for P. pacificus and C. elegans to compare and contrast epigenetic pathways. Assembly of this toolkit was done by identifying orthologous genes, including the “writers” and “erasers” of histone modifications. To complement this evolutionary approach, here we produce a data set of the suite of histone modifications present in P. pacificus.

2024-03-14 | PXD046748 | Pride

Immune reposne of germline-ablated P. pacificus exposed to S. marcescens

Project description:Transcriptional profiling of germline-ablated P. pacificus worms exposed to S. marcescens for 8 hours versus germline-ablated P. pacificus exposed to the control E. coli OP50. First goal was to identify genes that are involved in immune response of germline-ablated P. pacificus when exposed to S. marcescens. Second, this was compared to longevity-regulating genes in germline-deficient animals (see series GSE37331). One-condition experiments. Germline ablated P. pacificus worms exposed to S. marcescens for 8 hours versus germline-ablated P. pacificus exposed to the control E. coli OP50. 4 biological replicates for each condition, including 2 dye-swaps.

2012-04-17 | E-GEOD-37337 | biostudies-arrayexpress

Sulfitobacter pontiacus strain:S1704

Project description:Sulfitobacter pontiacus strain:S1704 Genome sequencing

| PRJNA609031 | ENA

Sulfitobacter pontiacus strain:WPMT18310

Project description:Sulfitobacter pontiacus strain:WPMT18310 Genome sequencing

| PRJNA1163064 | ENA

Pristionchus pacificus

Project description:Pristionchus pacificus Genome sequencing

| PRJNA242603 | ENA

Thaleichthys pacificus

Project description:Thaleichthys pacificus RAD sequencing