Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Wood decay metagenome

ABSTRACT: Identification of diverse bacteria in decaying wood in nature

PROVIDER: PRJDB10410 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR240863_1.fastq.gz	Fastqsanger.gz
	DRR240864_1.fastq.gz	Fastqsanger.gz
	DRR240865_1.fastq.gz	Fastqsanger.gz
	DRR240866_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

wood decay metagenome

Project description:Environmental DNA meta-barcoding uncovered the most comprehensive phylogenetic diversity and invisible lineages of early diverged wood-decaying mushrooms

| PRJDB8554 | ENA

wood decay metagenome

Project description:Decaying Picea abies logs Metagenome

| PRJNA285725 | ENA

Transcriptome analysis of pine wood decaying mechanism of Sparassis latifolia

Project description:To explore the pine wood decaying mechanism of Sparassis latifolia, we use RNA-seq to detect the gene expression.

2022-11-23 | GSE173822 | GEO

Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae

Project description:Agaricomycetes produce the most efficient enzyme systems to degrade wood and the most complex morphological structures in the fungal kingdom. Despite decades-long interest in their genetic bases, the evolution and functional diversity of both wood-decay and fruiting body formation are incompletely known.Here, we perform comparative genomic and transcriptomic analyses of wood-decay and fruiting body development in Auriculariopsis ampla and Schizophyllum commune (Schizophyllaceae), species with secondarily simplified morphologies and enigmatic wood-decay strategy and weak pathogenicity to woody plants. The plant cell wall degrading enzyme repertoires of Schizophyllaceae are transitional between those of white rot species and less efficient wood-degraders such as brown rot or mycorrhizal fungi. Rich repertoires of suberinase and tannase genes were found in both species, with tannases restricted to Agaricomycetes that preferentially colonize bark-covered wood, suggesting potential complementation of their weaker wood-decaying abilities and adaptations to wood colonization through the bark. Fruiting body transcriptomes of A. ampla and S. commune revealed a high rate of divergence in developmental gene expression, but also several genes with conserved developmental expression, including novel transcription factors and small-secreted proteins, some of the latter might represent fruiting body effectors. Taken together, our analyses highlighted novel aspects of wood-decay and fruiting body development in a widely distributed family of mushroom-forming fungi.

2019-06-18 | GSE132826 | GEO

wood decay metagenome

Project description:1) Aquatic 2) Marine 3) Submerged Wood 4) Fungi 5) Bacteria 6) Archaea Targeted loci

| PRJNA328472 | ENA

Wood decay metagenome

Project description:Wood decay metagenome Metagenome

| PRJNA550260 | ENA

wood decay metagenome

Project description:wood decay metagenome Metagenome

| PRJNA341568 | ENA

wood decay metagenome

Project description:Wood Targeted loci environmental