Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa Japonica Group strain:Shirokumamochi

ABSTRACT: Analysis of starch properties in glutinous rice cultivars in Hokkaido.

PROVIDER: PRJDB10840 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR258710_1.fastq.gz	Fastqsanger.gz
	DRR258710_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Oryza sativa Japonica Group

Project description:Hokkaido rice genome

| PRJDB2868 | ENA

Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Genome diversity analysis of rice varieties from Hokkaido

| PRJDB8749 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice leaf from selected cultivars

| PRJNA247402 | ENA

Oryza sativa Japonica Group strain:strain, cultivar

Project description:Raw sequence data Hokkaido rice breeding variety/strain

| PRJDB17096 | ENA

Oryza sativa Japonica Group strain:Nipponbare

Project description:Mapping of rice endosperm starch altered gelatinization mutant

| PRJDB5461 | ENA

Oryza sativa Japonica Group strain:Kokushokuto-2

Project description:Genetic studies of early heading in rice in Hokkaido

| PRJDB7712 | ENA

Oryza sativa

Project description:Whole genome resequencing analysis of rice cultivars of Hokkaido, Japan

| PRJDB8360 | ENA

Gene expression profile of rice leaf from selected cultivars

Project description:The genome structrure of domesticated species is influenced by complexity of breeding practices exercised by humans. Hokkaido is the northern-most regio of Japan, and one of northern limit of rice cultivation of world. The climatic conditions of Hokkaido are considered to be unsuitable for rice cultivation. Rice breeding programs of Hokkaido have focused on adaptability to specific local environmental condiitons (such as short growth period, low temperature conditions). These specific selection pressures have generated the unique genetic structures of Hokkaido rice cultivars. The genotype of sixty-three Hokkaido rice varieties were already analyzed by SSR marker, and the results showed that Hokkaido rice varieties were classified into six groups (Shinada et al, 2014). The unique genomic structures of six groups may have related to specific gene expression. This study analyze the gene expression profiles of Hokkaido rice variety.

2014-10-31 | GSE57645 | GEO

Oryza sativa Japonica Group

Project description:Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

| PRJNA108111 | ENA