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Aspergillus chevalieri

ABSTRACT: Genome analysis of Aspergillus chevalieri

PROVIDER: PRJDB10979 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	DRR262018_1.fastq.gz	Fastqsanger.gz
	DRR262018_2.fastq.gz	Fastqsanger.gz
	DRR262019_1.fastq.gz	Fastqsanger.gz
	DRR262020_1.fastq.gz	Fastqsanger.gz

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Project description:The full genome sequencing of the ﬁlamentous fungi Aspergillus nidulans, Aspergillus niger and Aspergillus oryzae has opened the possibilities for studying the cellular physiology of these fungi on a systemic level. As a tool to explore this, we are presenting an Aﬀymetrix GeneChip developed for transcriptome analysis of any of the three above-mentioned aspergilli. Transcriptome analysis of triplicate batch cultivations of all three aspergilli on glucose-and xylose media has been performed, and used to validate the performance of the micro array. By doing gene comparisons of all three species, and cross-analysing this with the expression data, 23 genes, including the xylose transcriptional activator XlnR, have been identiﬁed to be a conserved response across the Aspergillus sp. Promoter analysis of the upregulated genes in all three species suggest the XlnR-binding site to be 5’-GGNTAAA-3’. We are thus presenting a validated tool for transcription analysis of three Aspergillus species and a methodology for comparative transcriptomics. Keywords: Physiological response

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Chromosome-Level Genome Sequence of Aspergillus chevalieri M1, Isolated from Katsuobushi.

Project description:In this study, we report the chromosome-level genome sequence of the osmophilic filamentous fungus Aspergillus chevalieri M1, which was isolated from a dried bonito, katsuobushi. This fungus plays a significant role in the fermentation and ripening process. Thus, elucidating the sequence data for this fungus will aid in subsequent genomic research on the fungi involved in katsuobushi production.

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