Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aspergillus oryzae RIB40

ABSTRACT: RNA-seq of oryzapsin deletion mutants

PROVIDER: PRJDB11198 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR272358.fastq.gz	Fastqsanger.gz
	DRR272359.fastq.gz	Fastqsanger.gz
	DRR272360.fastq.gz	Fastqsanger.gz
	DRR272361.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Comparative Chemistry of Aspergillus oryzae (RIB40) and A. flavus (NRRL 3357).

Project description:Aspergillus oryzae and A. flavus are important species in industrial biotechnology and food safety and have been some of the first aspergilli to be fully genome sequenced. Bioinformatic analysis has revealed 99.5% gene homology between the two species pointing towards a large coherence in the secondary metabolite production. In this study we report on the first comparison of secondary metabolite production between the full genome sequenced strains of A. oryzae (RIB40) and A. flavus (NRRL 3357). Surprisingly, the overall chemical profiles of the two strains were mostly very different across 15 growth conditions. Contrary to previous studies we found the aflatrem precursor 13-desoxypaxilline to be a major metabolite from A. oryzae under certain growth conditions. For the first time, we additionally report A. oryzae to produce parasiticolide A and two new analogues hereof, along with four new alkaloids related to the A. flavus metabolites ditryptophenalines and miyakamides. Generally the secondary metabolite capability of A. oryzae presents several novel end products likely to result from the domestication process from A. flavus.

| S-EPMC3901201 | biostudies-literature

Aspergillus oryzae RIB40

Project description:Time-course mRNA-Seq analysis of Aspergillus oryzae RIB40 and the faaA disruptant grown in the presence of 1% Triton X-100

| PRJDB8293 | ENA

Aspergillus oryzae RIB40

Project description:Complete mitochondrial genome sequence

| PRJNA17431 | ENA

Aspergillus oryzae RIB40

Project description:Array CGH data of A. oryzae strains bearing targeted tandem chromosomal duplications

| PRJNA246049 | ENA

Aspergillus oryzae RIB40

Project description:Expression data from Aspergillus oryzae grown under hypoxic condition.

| PRJNA144865 | ENA

Aspergillus oryzae RIB40

Project description:Sequencing, assembly, and annotation

| PRJNA20809 | ENA

Aspergillus oryzae RIB40

Project description:Fine de novo sequencing of Aspergillus oryzae RIB40 using only SOLiD short reads

| PRJDB1864 | ENA

Aspergillus oryzae RIB40

Project description:Mycelial penetration in rice koji and nuclear increase of Aspergillus oryzae

| PRJDB9259 | ENA

Aspergillus oryzae RIB40

Project description:Aspergillus oryzae gene expression with 1hr galactose, glucose, and sorbitol induction.

| PRJNA307663 | ENA

Aspergillus oryzae RIB40

Project description:Expression analysis of Aspergillus oryzae grown on different carbon sources

| PRJNA212019 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data