Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Seawater metagenome

ABSTRACT: Spatiotemporal distribution of planktonic eukaryotes off Wakasa Bay, southern Sea of Japan

PROVIDER: PRJDB11574 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR295769_1.fastq.gz	Fastqsanger.gz
	DRR295769_2.fastq.gz	Fastqsanger.gz
	DRR295770_1.fastq.gz	Fastqsanger.gz
	DRR295770_2.fastq.gz	Fastqsanger.gz
	DRR295771_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

seawater metagenome

Project description:nifH diversity in the Sea of Japan and Sea of Okhotsk

| PRJDB10819 | ENA

seawater metagenome

Project description:Analysis of bacterial community composition in Minamata Bay, Japan

| PRJDB11204 | ENA

seawater metagenome

Project description:Bacteria community in the southern East China Sea

| PRJNA387529 | ENA

seawater metagenome

Project description:Protists community in the southern East China Sea

| PRJNA387530 | ENA

seawater metagenome

Project description:Sea ice metagenomes from North West Hudson bay

| PRJNA1011243 | ENA

Project description:Sediment eukaryotes in the southern Yellow Sea

| PRJNA894490 | ENA

Proteomics of Cycloclasticus endosymbiont of deep-sea mussel Bathymodiolus heckerae from Campeche Knolls, southern Gulf of Mexico

Project description:Bathymodiolin mussels are a group of bivalves associated with deep-sea reducing habitats, such as hydrothermal vents and cold seeps. These mussels usually engage in an obligatory symbiosis with sulfur and/or methane oxidizing Gammaproteobacteria. In addition to these bacteria, Bathymodiolus heckerae that inhabit gas and oil seeps in Campeche Bay, the southern Gulf of Mexico, host bacteria phylogenetically with the Cycloclasticus genus. We recently discovered the capability for short-chain alkane degradation in draft genomes of symbiotic Cycloclasticus. With proteomics, we investigated whether the genes required for this process are expressed by the symbionts.

2016-12-05 | PXD005351 | Pride

seawater metagenome

Project description:Amplicon sequencing of 18S rRNA gene, eukaryote assemblages in seawater in Matsushima Bay, Japan

| PRJDB13931 | ENA

Transcriptome profiling of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913

2015-11-03 | GSE74569 | GEO

Transcriptome profiling of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913

Project description:We compared genetic profiles of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913 and revealed genetic features during switch from planktonic to pellicle stage in Pseudoalteromonas sp. SM9913. mRNA profiles of Pseudoalteromonas sp. SM9913 planktonic cells, initial pellicle cells and mature pellicle cells were generated by Illumina Hiseq2000.

2015-11-03 | E-GEOD-74569 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data