Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Prunus kanzakura

ABSTRACT: Genomes of early-blooming varieties of flowering cherry

PROVIDER: PRJDB12110 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	DRR313276_1.fastq.gz	Fastqsanger.gz
	DRR313276_2.fastq.gz	Fastqsanger.gz
	DRR313277_subreads.fastq.gz	Fastqsanger.gz
	DRR313278_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Prunus yedoensis

Project description:Transcriptome dynamics in floral organs towards blooming in flowering cherry 'Somei-Yoshino' (Cerasus Ã yedoensis)

| PRJDB12348 | ENA

Prunus

Project description:Expression analysis of hybrid flowering cherry seedlings

| PRJDB11531 | ENA

Prunus speciosa

Project description:Complete genome assembly of flowering cherry Cerasus speciosa

| PRJDB17512 | ENA

Prunus avium transcriptome profiling

Project description:Profiling of fruit and leaves transcriptomes of cherry cultivars

2019-02-26 | GSE121997 | GEO

Prunus

Project description:Phased genome sequence of an interspecific hybrid flowering cherry, Somei-Yoshino

| PRJDB7997 | ENA

Identification and Comparative Analysis of Genes and MicroRNAs Involved in the Floral Transition of the Xinjiang Early-Flowering Walnut (Juglans regia L.)

Project description:For tree crops, shortening juvenile phase is a vital strategy for early flowering that ensure to bear fruits in advance to enhance breeding efficiency. In walnut (Juglans regia L.), it usually takes 3-5 years for blooming, but the early flowering (EF) walnut can even flower in a year after planted. The juvenile phase of EF walnut is shorter than the late flowering (LF) walnut, which is more propitious to breeding efficiency. In this study, using RNA sequencing (RNA-seq) and microRNA-seq, we profiled transcriptome-wide identification of gene expression and microRNAs between EF and LF walnuts.

2022-07-23 | GSE193061 | GEO

Molecular investigation of Tuscan sweet cherries sampled over three years: gene expression analysis coupled to metabolomics and proteomics

Project description:Sweet cherry (Prunus avium L.) is a stone fruit widely consumed and appreciated for its organoleptic properties, as well as its nutraceutical potential. We here investigated the characteristics of six non-commercial Tuscan varieties of sweet cherry maintained at the Regional Germplasm Bank of the CNR-IBE in Follonica (Italy) and sampled at maturity over three consecutive years (2016-2017-2018). We adopted an approach merging genotyping and targeted gene expression profiling with metabolomics. To complement the data, a study of the soluble proteomes was also performed on two varieties showing the highest content of phenolics. The results obtained revealed that the highest differences were observed in the expression of genes involved in the phenylpropanoid pathway during the three years and among the varieties, while metabolomics identified the presence of flavanols and proanthocyanidins in highest abundance in the varieties Morellona and Crognola. Finally, proteomics on these two varieties showed differences in proteins involved in stress response, primary metabolism, and cell wall expansion. To the best of our knowledge, this is the first multi-pronged study focused on Tuscan sweet cherry varieties providing insights into the differential abundance of genes, proteins and metabolites.

2021-06-14 | PXD019468 | Pride

Prunus speciosa

Project description:Haplotype-resolved genome assembly of flowering cherry Cerasus speciosa haplotype-2 (alternate haplotype)

| PRJDB18835 | ENA

Prunus speciosa

Project description:Haplotype-resolved genome assembly of flowering cherry Cerasus speciosa haplotype-1 (principal haplotype)

| PRJDB18834 | ENA

RNA-seq of wheat lodicules in four varieties at pre-flowering and early flowering stages

Project description:RNA-seq of wheat lodicules in two higly-chasmogamous (HCH) (Piko and Poezja) and two low-chasmogamy (LCH) (Euforia and KWS Dacanto) varieties at two developmental stages - pre-flowering and early flowering.

2022-09-18 | E-MTAB-12136 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data