Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Danio rerio strain:rw147

ABSTRACT: Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes

PROVIDER: PRJDB12206 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR315795_1.fastq.gz	Fastqsanger.gz
	DRR315795_2.fastq.gz	Fastqsanger.gz
	DRR315796_1.fastq.gz	Fastqsanger.gz
	DRR315796_2.fastq.gz	Fastqsanger.gz
	DRR315797_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Zebrafish (Danio rerio) 72hpf, WT control vs. MO-Prpf31 injected

Project description:Transcriptional profiling performed from total eye RNA extracts of wildtype control fishes versus Prpf31 morpholino injected larvae (at ~72hpf) two-condition experiment: wildtype zebrafish versus MO-Prpf31 injected zebrafish eye RNA; 6 replicates each (extraction from 6 pools (~200 eyes each) of controls and 6 pools MO-Prpf31 (~200 eyes each))

2010-05-06 | E-GEOD-20424 | biostudies-arrayexpress

Danio rerio

Project description:Transcriptome analysis of zebrafish yquem/urod mutant

| PRJNA101843 | ENA

Danio rerio

Project description:Transcriptome Analysis of the Zebrafish Mind Bomb Mutant

| PRJNA109963 | ENA

Danio rerio

Project description:Zebrafish presenillin1 mutant transcriptome

| PRJNA263170 | ENA

Danio rerio

Project description:Gene expression analysis of maternal zygotic ezh2 mutant zebrafish embryos vs wildtype at 0 and 3.3 hpf

| PRJNA271468 | ENA

TGFβ signaling in retinal tissue repair [Danio Rerio]

Project description:In mammals, retinal damage is followed by Müller glia cell activation and proliferation. While retinal gliosis persists in adult mammals after an insult or disease, some vertebrates, including zebrafish, have the capacity to regenerate. We believe we are the first group to show that gliosis is a fibrotic-like process in mammals’ eyes caused by differential activation of canonical and non-canonical TGFβ signaling pathways.

2019-11-03 | GSE132141 | GEO

Role of the Exon Junction Complex in Danio rerio

Project description:The exon junction complex (EJC) is composed of three core proteins Rbm8a, Magoh and Eif4a3 and is thought to play a role in several post-transcriptional processes. In this study we focus on understanding the role of EJC in zebrafish development. We identified transcriptome-wide binding sites of EJC in zebrafish via RNA:protein immunoprecipitation followed by deep sequencing (RIP-Seq). We find that, as in human cells, zebrafish EJC is deposited about 24 nts upstream of exon-exon junctions. We also identify transcripts regulated by Rbm8a and Magoh in zebrafish embryos using whole embryo RNA-seq from rbm8a mutant, magoh mutant and wild-type sibling embryos. This study shows that nonsense mediated mRNA decay is dysregulated in zebrafish EJC mutants.

2019-07-30 | GSE135019 | GEO

Danio rerio

Project description:Transcriptome analysis of zebrafish

| PRJNA1057483 | ENA

Diurnal Variation of Melatonin Receptors in Danio rerio (Zebrafish)

Project description:To gain a better understanding of the diurnal variation in gene expression, we analyzed the changes in gene expression in the eye of zebrafish. Dual color oligonucleotide microarrays were used to compare total RNA harvested from eyes of adult zebrafish at midday and midnight. Statistical analyses identified 44 genes which showed significant, 2-fold or more change; 26 genes showed decreased expression at midnight (D/L ≤ 0.5) and 18 genes showed increased expression at midnight (D/L ≥ 2). Seven genes were further analyzed using qPCR. The results of qPCR identified AANAT, Mel1a1, Mel1a3, Mel1b1, Mel1b2 and Melc as genes that showed significant change in expression at dawn, dusk, midday and midnight. These results suggest that expression of melatonin receptors is subject to diurnal regulation.

2012-05-10 | GSE29696 | GEO

Danio rerio

Project description:Transcriptome analysis on wild type and ddx39a mutant zebrafish embryos by Next Generation Sequencing

| PRJNA380609 | ENA