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Drinking water metagenome

ABSTRACT: Assessment of amoA genes diversity of Comammox in various biological water purification treatments in Japan

PROVIDER: PRJDB12432 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR322336_1.fastq.gz	Fastqsanger.gz
	DRR322336_2.fastq.gz	Fastqsanger.gz
	DRR322337_1.fastq.gz	Fastqsanger.gz
	DRR322337_2.fastq.gz	Fastqsanger.gz
	DRR322338_1.fastq.gz	Fastqsanger.gz

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Evaluating the transcriptomic and metabolic profile of mice exposed to source drinking water

Project description:Transcriptomic and metabonomic methods were used to investigate mice’s responses to drinking source water (DSW) exposure. After mice were fed with DSW for 90 days, hepatic transcriptome was characterized by microarray and serum metabonome were determined by 1H nuclear magnetic resonance (NMR) spectroscopy. A total of 243 differentially expressed genes (DEGs) were identified, among which 141 genes were up-regulated and 102 genes were down-regulated. Metabonomics revealed significant changes in concentrations of creatine, pyruvate, glutamine, lysine, choline, acetate, lipids, taurine and trimethylamine oxide. Four biological pathways were identified by Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis where both gene expression and metabolite concentrations were altered in response to DSW exposure. These results highlight the significance of combined use of transcriptomic and metabonomic approaches in evaluating potential health risk induced by DSW contaminated with various hazardous materials.

2012-01-01 | GSE30940 | GEO

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