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Allium cepa

ABSTRACT: Development of an efficient genotyping method based on target amplicon sequence for onion breeding

PROVIDER: PRJDB12466 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR323290_1.fastq.gz	Fastqsanger.gz
	DRR323290_2.fastq.gz	Fastqsanger.gz
	DRR323291_1.fastq.gz	Fastqsanger.gz
	DRR323291_2.fastq.gz	Fastqsanger.gz
	DRR323292_1.fastq.gz	Fastqsanger.gz

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Ethylene and 1-MCP differentially regulate gene expression during onion (Allium cepa L.) sprout suppression

2011-06-29 | GSE27132 | GEO

Ethylene and 1-MCP differentially regulate gene expression during onion (Allium cepa L.) sprout suppression

Project description:Onion is regarded as non-climacteric. In onion, ethylene can suppress sprouting however, the ethylene binding inhibitor, 1-MCP can also suppress sprout growth although it is unknown how ethylene and 1-MCP elicit the same response. In this study, onion bulbs were treated with 10 μL L-1 ethylene or 1 μL L-1 1-MCP individually or in combination for 24 h at 20°C before or after curing (six weeks) at 20 or 28°C then stored at 1°C. Following curing, a subset of these same onion bulbs was stored separately under continuous air or ethylene (10 μL L-1) at 1°C Six treatments were chosen for microarray analysis; four samples were taken before curing immediately after treatment with ethylene or 1-MCP or ethylene and 1-MCP in combination for 24 h at 20°C. The other two samples and two were taken at the end of storage following 6 weeks curing at 28°C andafter 29 weeks cold storage (1°C) in continuous air or continuous ethylene totalling 35 weeks storage. The four pre-curing samples used were untreated (control) or treated with EB, MB or EMB and the two samples after storage were control bulbs stored in continuous ethylene or air at 1°C. There were three biological replicates of each of the six treatments making 18 samples in total.

2011-06-29 | E-GEOD-27132 | biostudies-arrayexpress

Allium cepa

Project description:Transcriptome Analysis Sweet Taste Formation in Onion Bulb Swelling

| PRJNA319303 | ENA

Allium cepa

Project description:Physiological, biochemical and transcriptional analysis of onion bulbs during storage

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Allium cepa

Project description:Onion, important vegetable plant that is usually used as a flavor enhancer.

| PRJNA12548 | ENA

Allium cepa

Project description:Ethylene and 1-MCP differentially regulate gene expression during onion (Allium cepa L.) sprout suppression

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Allium cepa strain:light red

Project description:Transcriptome analysis of Allium cepa (Onion) bulb

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Project description:Application of Integrated-Omics Analysis using Allium Bio-Resources to Onion Breeding

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Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum.

Project description:Knowledge of the fascinating world of DNA repeats is continuously being enriched by newly identified elements and their hypothetical or well-established biological relevance. Genomic approaches can be used for comparative studies of major repeats in any group of genomes, regardless of their size and complexity. Such studies are particularly fruitful in large genomes, and useful mainly in crop plants where they provide a rich source of molecular markers or information on indispensable genomic components (e.g., telomeres, centromeres, or ribosomal RNA genes). Surprisingly, in Allium species, a comprehensive comparative study of repeats is lacking. Here we provide such a study of two economically important species, Allium cepa (onion), and A. sativum (garlic), and their distantly related A. ursinum (wild garlic). We present an overview and classification of major repeats in these species and have paid specific attention to sequence conservation and copy numbers of major representatives in each type of repeat, including retrotransposons, rDNA, or newly identified satellite sequences. Prevailing repeats in all three studied species belonged to Ty3/gypsy elements, however they significantly diverged and we did not detect them in common clusters in comparative analysis. Actually, only a low number of clusters was shared by all three species. Such conserved repeats were for example 5S and 45S rDNA genes and surprisingly a specific and quite rare Ty1/copia lineage. Species-specific long satellites were found mainly in A. cepa and A. sativum. We also show in situ localization of selected repeats that could potentially be applicable as chromosomal markers, e.g., in interspecific breeding.

| S-EPMC6387171 | biostudies-literature

Allium fistulosum

Project description:perennial onion species

| PRJNA198042 | ENA