Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bioreactor sludge metagenome

ABSTRACT: Effect of frequency of organic load shock on the microbial community progression of an anaerobic digester acclimatized to low organic loading rate (low frequencies - C-0 and E-8)

PROVIDER: PRJDB12841 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR337849_1.fastq.gz	Fastqsanger.gz
	DRR337849_2.fastq.gz	Fastqsanger.gz
	DRR337850_1.fastq.gz	Fastqsanger.gz
	DRR337850_2.fastq.gz	Fastqsanger.gz
	DRR337851_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 78

Similar Datasets

bioreactor sludge metagenome

Project description:Effect of frequency of organic load shock on the microbial community progression of an anaerobic digester acclimatized to low organic loading rate (high frequencies - E-2 and E-4)

| PRJDB12840 | ENA

bioreactor sludge metagenome

Project description:Effect of frequency of organic load shock on the microbial community progression of an anaerobic digester acclimatized to high organic loading rate

| PRJDB12842 | ENA

biogas fermenter metagenome

Project description:Metagenomic study of a biogas digester running under low organic load

| PRJNA342105 | ENA

Immunomodulatory Effects of Massage on Non-Perturbed Skeletal Muscle in Rats

Project description:Microarray was used as a screening tool to determine changes in gene transcription with cyclic compressive loading (CCL) (massage mimetic) applied at varying magnitudes in non-perturbed skeletal muscle. 24 male Wistar Rats were randomly assigned to one of three groups based on magnitude of load: Control: 0N; Low Load: 1.4N, and Moderate Load 4.5N. Animals were anesthetized using isofluorane, postioned lateral-recumbant with one limb secured to a platform with the Tibialis Anterior (TA) muscle facing superiorly. Using a custom CCL device, load was applied along the length of the TA cycled at 15mm proximally and distally at a frequency of 0.5Hz. Each animal received a 30-min bout of CCL once a day for four consecutive days. Rats were euthanized 24 hour following the fourth treatment. TA muscles were harvested and preserved cryogenically. Muscle tissue was homogenized, and RNA was isolated using ToTALLY RNA kit. Microarray was performed using Affymetrix GeneChip system.

2013-09-01 | E-MEXP-3957 | biostudies-arrayexpress

Low nitrogen loading Anammox bioreactor

Project description:Impact of nitrogen loading rate on anammox reactor community

| PRJEB31362 | ENA

Project description:Effects of organic loading rate on hydrogen and methane production

| PRJNA1031586 | ENA

Gene expression profiles in E. coli under different frequency signals

Project description:To identify the physiological effects of the multiple frequency signaling through the SIMO module of EnvZHK, we used transcriptome sequencing to study the influences of different frequency inputs to gene expressions in E.coli. From the results we found that different frequency signals through the SIMO module resulted in distinct gene expressions. Moreover, the PCA result showed a significant difference between frequency response gene expression profiles under the wildtype and the mutant EnvZHK SIMO module that the gene expression profile of the wildtype samples under middle frequencies were closer to that under high frequencies, while the gene expression profile of the mutant samples under middle frequencies were closer to that under low frequencies. Interestingly, these relationships of the expression patterns were in agreement with that of these effective frequency spectrums of the SIMO module, indicating that particular frequency signals determine the distinct gene expression profiles.

2018-07-19 | GSE117326 | GEO

Role of TCR:peptide/MHC Class I Affinity in Directing Different Maturation Phenotypes of Dominant and Subdominant Epitope-Specific CD8+ T Cells in Mamu-A*01+ Rhesus Monkeys

Project description:CD8+ T cells that bind different regions of proteins derived from a virus are often present at different frequencies. It is thought that those virus-specific CD8+ T cells that are present at the highest frequency are predominantly responsible for control of viral infections. While the number of virus-specific CD8+ T cells is undoubtedly important, the functionality of these cells may also play a role in their anti-viral capacity. It was not known if virus-specific CD8+ T cells present at high frequencies are more functionally effective against viral infection than those present at low frequencies. In this study, we characterized the functional differences between the SIV-specific cells present at high frequencies to those present at low frequencies in the blood of rhesus monkeys infected with simian immunodeficiency virus (SIV). We found that the high-and low-frequency SIV-specific cells had different functional capacities both during acute and chronic SIV infection. We also found that the strength with which a cell interacts with the proteins derived from the virus may contribute to the functional differences between the high- and low-frequency cells. These findings further our understanding of anti-viral responses and may inform HIV vaccine design.

2014-04-24 | GSE54001 | GEO

Repetitive in vivo manual loading of the spine elicits cellular responses in porcine annuli fibrosi

Project description:Back pain and intervertebral disc degeneration are prevalent, costly, and widely treated by manual therapies, yet the underlying causes of these diseases are indeterminate as are the scientific bases for such treatments. The present studies characterize the effects of repetitive in vivo manual loads on porcine intervertebral disc using RNA deep sequencing. A single session of repetitive manual loading applied to the lumbar spine induced both up- and down-regulation of a variety of genes transcribed by cells in the ventral annuli fibrosi. The effect of manual therapy at the level of loading was greater than at a level distant to the applied load. Gene ontology and molecular pathway analyses categorized biological, molecular, and cellular functions influenced by repetitive manual loading, with over-representation of membrane, transmembrane, and pericellular activities. The present studies support previous findings of intervertebral disc cell mechanotransduction, and are the first to report comprehensively on the repertoire of gene targets influenced by mechanical loads associated with manual therapy interventions. The present study defines the cellular response of repeated, low-amplitude loads on the annuli fibrosi and lays the foundation for future work defining how the intervertebral disc responds to single or low-frequency manual loads typical of those applied clinically.

2021-02-26 | GSE166656 | GEO

metagenome

Project description:Complexity of acclimatization substrate affects anaerobic digester microbial community response to organic load shocks

| PRJDB12753 | ENA