Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hyphomicrobiales

ABSTRACT: Whole Genome Analysis of symbiotic rhizobacteria isolated from Vigna marina

PROVIDER: PRJDB13357 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR374936_1.fastq.gz	Fastqsanger.gz
	DRR374937_1.fastq.gz	Fastqsanger.gz
	DRR374938_1.fastq.gz	Fastqsanger.gz
	DRR374939_1.fastq.gz	Fastqsanger.gz
	DRR374940_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 33

Similar Datasets

Vigna marina subsp. marina

Project description:Whole Genome Sequencing of Vigna marina subsp. marina

| PRJNA445647 | ENA

Plant root transcriptome profiling of Azospirillum-rice cooperation

2014-12-22 | GSE59137 | GEO

rhizosphere metagenome

Project description:Symbiotic Specificity between Beach Beans (Vigna marina) and Rhizobia Spatially Separated

| PRJDB12038 | ENA

Identification and Analysis of Red Sea Mangrove (Avicennia marina) microRNAs by High-Throughput Sequencing and their Association with Stress Responses

Project description:we used high-throughput Illumina Genome Analyzer IIx (GAIIx) technology to sequence the small RNA transcriptomes of the mangrove species, Avicennia marina. Based on sequence similarity or the secondary structure of precursors, we have identified 193 conserved miRNAs and 26 novel miRNAs in the small RNA transcriptome of Avicennia marina.

2013-01-23 | GSE43669 | GEO

Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions

Project description:In this study, we investigated the metabolic potential of N. marina based on its complete genome sequence and performed physiological experiments to test genome-derived hypotheses. Our data confirm that N. marina benefits from additions of undefined organic carbon substrates, has adaptations to resist oxidative, osmotic and UV light-induced stress and low dissolved pCO2. Additionally, N. marina is able to grow chemoorganotrophically on formate, and is thus not an obligate chemolithoautotroph. We further investigated the metabolic response of N. marina to low (5.6 µM) O2 concentrations. In response to O2-limited conditions, the abundance of a potentially more efficient CO2-fixing pyruvate:ferredoxin oxidoreductase (POR) complex and a high-affinity cbb3-type terminal oxidase increased, suggesting a role in sustaining nitrite oxidation-driven autotrophy under O2 limitation.

2021-04-20 | PXD021606 | Pride

Hyphomicrobiales

Project description:Hyphomicrobiales Genome sequencing and assembly

| PRJNA421056 | ENA

Plant root transcriptome profiling of Azospirillum-rice cooperation

Project description:Cooperation involving Plant Growth-Promoting Rhizobacteria results in improvements of plant growth and health. While pathogenic and symbiotic interactions are known to induce transcriptional changes for genes related to plant defense and development, little is known about the impact of phytostimulating rhizobacteria on plant gene expression. In this context, this study aimed at identifying genes significantly regulated in rice roots upon Azospirillum inoculation, considering possible favored interaction between a strain and its original host cultivar. Genome-wide analyses of root gene expression of Oryza sativa japonica cultivars Cigalon and Nipponbare were performed, by using microarrays, seven days post inoculation with A. lipoferum 4B (isolated from Cigalon roots) or Azospirillum sp. B510 (isolated from Nipponbare) and compared to the respective non-inoculated condition. For each of the four condition, three replicates were analysed on an oligo microarray produced by NimbleGenTM (Madison, WI, USA). The microarray was derived of the one previously described in Yuan et al. 2005 . This microarray is composed of about 385,000 60mer probes selected for their GC content, Tm and number of cycles needed to synthesize the oligo. This chip contains 90,000 probes representing 45,000 genes (two probes per gene) of rice Oryza sativa ssp. japonica, based on the TIGR rice genome annotation version 3.1 genes (Chaparro et al. 2007) and 201 691 oligomers corresponding to previously described copies of LTR retrotranposons available on the retrOryza database (www.retroryza.fr). Probes represent 1,000 bp of the LTR-retrotransposon flanking regions at the 3M-bM-^@M-^Y and 5M-bM-^@M-^Y side. The oligonucleotides have been designed at the 3M-bM-^@M-^Y end of the genes to detect the readings of reverse transcriptase. On the other hand, the LTR-retrotransposons are represented throughout their length at the rate of a probe every 500 bp.

2014-12-22 | E-GEOD-59137 | biostudies-arrayexpress

Project description:Genomic and transcriptomic data of Vigna marina and Vigna luteola

| PRJNA1080052 | ENA

Identification and Analysis of Red Sea Mangrove (Avicennia marina) microRNAs by High-Throughput Sequencing and their Association with Stress Responses

2013-01-23 | E-GEOD-43669 | biostudies-arrayexpress

Project description:Whole genome analysis of high salt tolerant plant growth promoting rhizobacteria

| PRJNA1186382 | ENA