Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mustela putorius furo

ABSTRACT: Ferret single cell transcriptomics analysis

PROVIDER: PRJDB13528 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR496478_1.fastq.gz	Fastqsanger.gz
	DRR496478_2.fastq.gz	Fastqsanger.gz
	DRR496479_1.fastq.gz	Fastqsanger.gz
	DRR496479_2.fastq.gz	Fastqsanger.gz
	DRR496480_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 22

Similar Datasets

Development of molecular genetic analysis tools for the domestic ferret (Mustela putorius furo)

Project description:The domestic ferret (Mustela putorius furo) has been used as animal model for decades, largely because its susceptibility to infection with a large number of pathogens such as influenza virus, SARS Corona virus and Canine distemper virus. Despite its importance for biomedical research, little is known about the genome of the M. Furo. The number of reagents for molecular and immunological analysis is thus restricted. To circumvent this, we present here a parallel sequencing effort to produce an extensive EST dataset derived from a normalized ferret cDNA library made from mRNA from ferret blood, liver, lung, spleen and brain. We produced more than 500000 sequence reads that were assembled into over 15000 partial ferret transcripts. These ESTs were combined with the available ferret sequences in the GenBank to develop a ferret specific microarray platform. Using this array, we detected tissue specific expression patterns which were confirmed by quantitative real time PCR assays and comparison to orthologous transcription profiles of mouse and human. We also present a set of 41 ferret transcript with even transcription profile across the tested tissues, indicating their usefulness as housekeeping genes. This study paves way for development of additional reagents for analysis of the ferret model.

2010-09-13 | GSE19398 | GEO

Mustela putorius furo

Project description:domestic ferret

| PRJNA59949 | ENA

Development of molecular genetic analysis tools for the domestic ferret (Mustela putorius furo)

2010-09-13 | E-GEOD-19398 | biostudies-arrayexpress

Mustela putorius furo

Project description:Ferret MHC Genome sequencing and assembly

| PRJNA580247 | ENA

Mustela putorius furo

Project description:Development of molecular genetic analysis tools for the domestic ferret (Mustela putorius furo)

| PRJNA121761 | ENA

Mustela putorius furo

Project description:IF001 - Microarray analysis from ferret infections with highly pathogenic reconstructed H1N1 1918 influenza virus.

| PRJNA212790 | ENA

Mustela putorius furo isolate:JIRA1106

Project description:Development of ferret immune repertoire reference resources and single-cell-based high- throughput profiling assays

| PRJNA939558 | ENA

Mustela putorius furo

Project description:Cdk5 sequencing, CRISPR/Cas9-mediated knockout of the Cdk5 gene in the ferret cerebral cortex.

| PRJDB6112 | ENA

Mustela putorius furo

Project description:Differential kinetics of host responses during infection with genetically distinct henipavirus strains in a lethal ferret model

| PRJNA289121 | ENA

Establishment of an induced pluripotent stem cell line from a female domestic ferret (Mustela putorius furo) with an X chromosome instability

Project description:The domestic ferret (ferret; Mustela putorius furo) is an important animal model for neuroscience and preclinical/veterinary medicine owing to its susceptibility to avian influenza and corona viruses. Nevertheless, there is a lack of in vitro ferret models, since immortal cell lines including induced pluripotent stem cells (iPSCs) of ferrets have been scarce. In this study, we established an induced pluripotent stem cell line from skin fibroblasts of a neonatal female ferret using a previously validated method in multiple mammalian species. The established line, fiPS-1, showed standard characteristics of pluripotency, but it showed an X chromosome instability characterized by the high emergence rate of aneuploid 39X cells from the original 40XX euploid cells.

2021-03-12 | GSE168701 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data