Chionoecetes opilio
Ontology highlight
ABSTRACT:
PROVIDER: PRJDB13558 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| DRR375539_1.fastq.gz | Fastqsanger.gz | |||
| DRR375539_2.fastq.gz | Fastqsanger.gz | |||
| DRR375540_1.fastq.gz | Fastqsanger.gz | |||
| DRR375540_2.fastq.gz | Fastqsanger.gz | |||
| DRR375541_1.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 5 of 14 |
Similar Datasets
Project description:Draft genome sequence of uncultured bacilliform virus in snow crab
| PRJDB5425 | ENA
Project description:Genome sequencing of Chionoecetes opilio bacilliform virus
| PRJDB13899 | ENA
Project description:The complete mitochondrial genome of Chionoecetes opilio is a 16,067 bp long, circular molecule which contains 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA genes (rRNAs). Its gene contents and organization are generally similar to other majoid mitogenomes. However, the mitogenome shows unique characteristics; long terminal amino acids, loss or addition of 3 PCGs, a 1216 bp long putative D-loop region, and peculiar secondary structures of 5 tRNAs. The concatenated amino acid sequences of 13 PCGs were used to analyze the phylogenetic tree, which well supported the monophyly of brachyuran clades of Majoidea, Heterotremata, Thoracotremata, and Eubrachyura.
| S-EPMC7782958 | biostudies-literature
Project description:The snow crab (Chioneocetes opilio) fishery in the Barents Sea is carried out by large offshore vessels, as the fishing grounds are located far from shore and the gear must be transported back and forth over long distances. Therefore, fishers use stackable conical pots that allow large numbers of pots to be carried on deck for each trip. One of the drawbacks of using stackable pots is that the entrance is at the vertex of the conical pot, which fishers claim does not provide the desired fishing efficiency. Thus, the goal of this study was to determine whether a different pot design would improve the catch efficiency of snow crabs. We investigated the efficiency of a new type of pot called the moon pot, which provides continuous increased bait odour intensity as snow crabs make their way towards the entrance of the pot. This alteration was expected to increase catch efficiency compared to that of the conical pots used by the fleet today. However, experimental fishing results showed that the modified pots had significantly lower catch efficiency than the standard conical pots, as only ~66% of the number of crabs caught by the conical pots were caught in the moon pots. The main reason for this reduced catch efficiency likely was the initial steepness of the moon pot, which may have made it difficult for crabs to reach the pot entrance. These results demonstrated that pot design can dramatically affect catch efficiency of snow crabs.
| S-EPMC6638949 | biostudies-literature
Project description:Chionoecetes opilio isolate:MADBK_172401_ WGS Genome sequencing and assembly
| PRJNA602365 | ENA
Project description:In commercial snow crab (Chionoecetes opilio) fishery, the catch efficiency of the conical pots is important for increasing the profitability of the industry. This study evaluated the effect of adding green and white light emitting diodes (LED) on the catch efficiency of commercially used conical pots. The results from the field experiments showed that inserting artificial lights significantly increases the catch efficiency for snow crab over the minimum landing size of 95 mm carapace width of up to 76% when using green LED, and by 52-53% on average when using white LED. This study shows that it is possible to improve the catch efficiency of the snow crab fishery by applying artificial LED lights to the conical snow crab pots, potentially resulting in an important economic benefit to the snow crab fishery.
| S-EPMC8491883 | biostudies-literature
Project description:The snow crab, Chionoecetes opilio, is a giant deep-sea brachyuran. While several decapod crustaceans generally continue to molt and grow throughout their lifetime, the snow crab has a fixed number of molts. Adolescent males continue to molt proportionately to their previous size until the terminal molt at which time an allometric increase in chela size occurs and an alteration of behavioral activities occurs, ensuring breeding success. In this study, we investigated the circulating concentrations of methyl farnesoate (an innate juvenile hormone in decapods) (MF) before or after the terminal molt in males. We then conducted eyestalk RNAseq to obtain molecular insight into the regulation of physiological changes after the terminal molt. Our analyses revealed an increase in MF titers after the terminal molt. This MF surge may be caused by suppression of the genes that encode MF-degrading enzymes and mandibular organ-inhibiting hormone that negatively regulates MF biosynthesis. Moreover, our data suggests that behavioral changes after the terminal molt may be driven by the activation of biogenic amine-related pathways. These results are important not only for elucidating the physiological functions of MFs in decapod crustaceans, which are still largely unknown, but also for understanding the reproductive biology of the snow crab.
| S-EPMC10156855 | biostudies-literature
Project description:Data obtained using three different types of sampling gear is compared and combined to assess the size composition and density of a non-indigenous snow crab population Chionoecetes opilio in the previously free of alien species Kara Sea benthos. The Sigsbee trawl has small mesh and catches even recently settled crabs. The large bottom trawl is able to catch large crabs, but does not retain younger crabs, due to its large mesh. Video sampling allows the observation of larger crabs, although some smaller crabs can also be spotted. The combined use of such gear could provide full scope data of the existing size groups in a population. The density of the crabs was calculated from the video footage. The highest figures were in Blagopoluchiya Bay at 0.87 crabs/m2, where the settlement seems to be reaching its first peak of population growth after the introduction. High density in the Kara Gates Strait at 0.55 crabs/m2, could be due to the close proximity of the Barents Sea from where the crabs can enter by both larval dispersal and active adult migration. All size groups have been present in most sampled areas, which suggest successful settlement and growth of crabs over a number of years. Again, this was not the case in Blagopoluchiya Bay with high density of small crabs (<30 mm CW), which confirms its recent population growth. Male to female ratio was strikingly different between the bays of the Novaya Zemlya Archipelago and west of the Yamal Peninsula (0.8 and 3.8 respectively). Seventy five ovigerous females were caught in 2016, which confirms the presence of a reproducing population in the Kara Sea. The spatial structure of the snow crab population in the Kara Sea is still in the process of formation. The presented data indicates that this process may lead to a complex system, which is based on local recruitment and transport of larvae from the Barents Sea and across the western Kara shelf; formation of nursery grounds; active migration of adults and their concentration in the areas of the shelf with appropriate feeding conditions.
| S-EPMC6842564 | biostudies-literature
Project description:Background: The Scylla paramamosain is a very important aquaculture crustacean species in the southeast coastal areas of China including Shantou. For the past few years, mud crab cultured in Niutianyang of Shantou suffered from serious diseases, especially the bacterial diseases (such as Vibrio parahaemolyticus). In eukaryotes, small RNAs can regulate gene expression in post-transcription to act on host-pathogen interaction system. Aims: V.parahaemolyticus isolated from Shantou Niutianyang crab culture area was injected to S.paramamosains to carry out an essential analysis on global miRNA expression in diverse tissues between two groups by the Illumina Solex deep sequencing technology. Methodology:To examine the relationship between mud crab miRNA expression and the bacterial pathogen, we collected mixed two pools of equal amounts of RNA from 7 different mud crab tissues (mesenteron, heart, liver, gill, brain, muscle and blood) and sequencing by Illumine/Solexa deep sequencing technology under normal conditions and during infection with V.parahaemolyticus. The high throughput sequencing resulted in 19,144,358 and 18,559,070 raw reads corresponding to 17,496,577 and 16,888,096 high-quality mappable reads for the normal and infected mixed pools, respectively. Stem-loop RT-qPCRs were used to confirm the microRNAs expression in different tissues of two pools. The results show that miRNAs might play a key role in regulating gene expression during mud crab S.paramamosain infection with V.parahaemolyticus. Conclusions: We identified a large number of miRNAs during the mud crab Scylla paramamosain infection with V.parahaemolyticus, some of which are differentially expressed between the treatments and the controls. The study provides an opportunity for further understanding of small RNA function in the regulation of molecular response and gives us clues for further studies of the mechanisms of V.parahaemolyticus infection in mud crab.
2012-08-07 | GSE39921 | GEO