Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Seawater metagenome

ABSTRACT: Environmental DNA metabarcoding analysis of vertebrates in Matsushima Coast of Miyagi Prefecture, Japan

PROVIDER: PRJDB13871 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR392169_1.fastq.gz	Fastqsanger.gz
	DRR392169_2.fastq.gz	Fastqsanger.gz
	DRR392170_1.fastq.gz	Fastqsanger.gz
	DRR392170_2.fastq.gz	Fastqsanger.gz
	DRR392171_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 320

Similar Datasets

seawater metagenome

Project description:Hawai'i coral reef seawater, environmental DNA metabarcoding

| PRJNA607318 | ENA

seawater metagenome

Project description:Environmental DNA of deep-sea corals from the U.S. West Coast

| PRJNA397220 | ENA

seawater metagenome

Project description:Overwintering fish community in ice-covered Saroma-ko Lagoon, Hokkaido, Japan, inferred from metabarcoding-based detection of fish environmental DNA

| PRJDB18391 | ENA

Seawater samples

Project description:Multispecies environmental DNA metabarcoding sheds light on annual coral spawning events

| PRJNA801064 | ENA

Embryophyta

Project description:DNA barcoding of plants in Hiroshima Prefecture, Japan

| PRJDB14597 | ENA

seawater metagenome

Project description:Spatiotemporal dynamics of fish communities in the Boso Peninsula based on the analysis of environmental DNA metabarcoding

| PRJDB13486 | ENA

Project description:Environmental DNA metabarcoding of vertebrates and invertebrates in Alpine ponds Raw sequence reads

| PRJNA515187 | ENA

riverine metagenome

Project description:Environmental DNA metabarcoding analysis of vertebrates in lakes and waterfalls in Babeldaob Island, the Republic of Palau

| PRJDB18072 | ENA

riverine metagenome

Project description:Environmental DNA metabarcoding analysis of Leptospira and broad bacteria in Iriomote Island, O kinawa, Japan

| PRJDB11858 | ENA

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data