Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana strain:col-0

ABSTRACT: Single-cell RNA sequencing of Arabidopsis inner leaf tissues identifies myrosin and glucosinolate-producing cells

PROVIDER: PRJDB14071 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR396222_1.fastq.gz	Fastqsanger.gz
	DRR396222_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Arabidopsis thaliana Col-0 inflorescence small RNAs

2016-05-18 | GSE79119 | GEO

Transcriptome profiles and comparison of Arabidopsis thaliana woody (soc1-ful) and WT (Col-0) stems.

Project description:The douple mutant Arabidopsis thaliana soc1 ful, in contrast with WT, produces an interfascicular cambium and a large wood cylinder is the flowering stem. We present the RNAseq data for polyA mRNA of different developmental stages of cambium and wood formation in Arabidopsis thaliana. We sequenced 7 stages; 4 in the woody mutant soc1-6 ful-7 (herbaceous, cambium initiation, wood initiation and leaf) and 3 stages in the WT Col-0 (herbaceous, cambium and leaf). The corresponding stem anatomy is also presented in the manuscript indicating the stage of cambium development and the production of secondary xylem.

2016-05-21 | GSE69167 | GEO

smRNAs in wildtype and RDR6-15 knockout Arabidopsis thaliana Col-0 leaf

Project description:This set consists of small RNAs sequenced from two replicates of wildtype and two replicates of RDR6-15 knockout Arabidopsis thaliana Col-0 leaf samples. RDR6 is required for the production of tasRNAs (trans-acting small RNAS) and so tags associated with the tasRNA loci should be severely down-regulated or absent in the knockout compared to wildtype. The set can thus be used as containing known true positives for testing differential expression detection methods.

2010-11-22 | GSE16959 | GEO

Arabidopsis thaliana Col-0 inflorescence small RNAs

Project description:Small RNA sequences from Arabidopsis thaliana Col-0 inflorescence tissues of three biological replicates. The data were analyzed to identify non-templated nucleotides in Arabidopsis small RNAs. Inflorescence samples are collected from three biological replicates of Col-0 wild-type Arabidopsis plants.

2016-05-18 | E-GEOD-79119 | biostudies-arrayexpress

RNAseq of Arabidopsis thaliana Col-0 inflorescences

Project description:Paired-end Illumina RNA sequencing of Arabidopsis thaliana Col-0 inflorescences

2016-11-14 | GSE74717 | GEO

Arabidopsis thaliana cultivar:Col-0

Project description:Single-cell RNAseq data of Arabidopsis root and above-ground tissues

| PRJNA742744 | ENA

Arabidopsis thaliana Col-0 Al stress 6hrs

Project description:Transcriptional profiling of roots in Arabidopsis Col-0 with 10 µM AlCl3 6hrs vs w/o AlCl3 6hrs

2014-10-11 | GSE62238 | GEO

RNA-seq of Arabidopsis thaliana Col-0 siliques

Project description:Paired-end Illumina RNA sequencing of Arabidopsis thaliana Col-0 siliques.

2016-11-16 | GSE89617 | GEO

Arabidopsis thaliana ecotype Col-0 versus T-DNA mutant sir1-1

Project description:Arabidopsis thaliana Col-0 plants were compared to sir1-1 T-DNA insertion mutants to investigate transcript levels of sulfur metabolism related genes under standard conditions. For wildtype Col-0 and sir1-1, leaf tissue was harvested from 3 independent plants that were 7 weeks old; total RNA was extracted, reverse transcribed and labeled with Cy3 or Cy5, hybridised on custom made array.

2010-05-05 | E-GEOD-20670 | biostudies-arrayexpress

Transcriptome-wide analysis of wounded region gene expression using detached first-pair rosette leaves before culture (time 0) and 2 day after culture (DAC) from 12-day-old Col-0 seedlings

Project description:To reveal the molecular mechanism during de novo root regeneration from Arabidopsis leaf explants cultured on B5 medium without exogenous hormones, we carried out an RNA-seq experiment using detached leaf explants with partial petiole before culture (i.e. time 0) and 2 d after culturing (DAC) from12-d-old Col-0 seedlings. Gene expression of the wounded region (including the partial petiole and some surrounding tissues), which comprises regeneration-competent cells, was analyzed.

2019-10-22 | GSE139165 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data