Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bos taurus strain:Japanese Black Cow

ABSTRACT: Bovine granulosa cells and oocytes cultured on plastic plate or Xanthan and Locust Bean Gum gel

PROVIDER: PRJDB14229 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR399909.fastq.gz	Fastqsanger.gz
	DRR399910.fastq.gz	Fastqsanger.gz
	DRR399911.fastq.gz	Fastqsanger.gz
	DRR399912.fastq.gz	Fastqsanger.gz
	DRR399913.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Bos taurus strain:Japanese Black Cow

Project description:Bovine granulosa cells and oocytes cultured on plastic plate or Xanthan and Locust Bean Gum gel

| PRJDB14851 | ENA

Bos taurus strain:Japanese Black Cow

Project description:Bovine granulosa cells cultured on plastic dish or Xanthan and Locust been gum gel

| PRJDB10383 | ENA

Bos taurus strain:Japanese Black Cow

Project description:Bovine eight cell stage embryos derived from oocytes matured on plastic dish or Xanthan and Locust been gum gel

| PRJDB14869 | ENA

Functional exploration of novel glycoside hydrolases in Fervidibacter sacchari PD1T

Project description:Few aerobic hyperthermophiles degrade polysaccharides. We describe the genome-enabled enrichment and isolation of an aerobic hyperthermophile, Fervidibacter sacchari, which was originally ascribed to candidate phylum Fervidibacteria. F. sacchari uses polysaccharides and monosaccharides as sole carbon sources from 65-87.5 °C, and its genome encodes 117 glycoside hydrolases (GHs) spanning 49 GH families, including 31 homologs of understudied GH109, GH177, and GH179 domains. Here, we analyzed the transcriptomes of F. sacchari cells grown on eight different sole carbon and energy sources (beta-glucan, chondroitin sulfate, corn stover, gellan gum, locust bean gum, starch, xanthan gum, and xyloglucan) to link glycoside hydrolase substrate to function, as well as identify potential regulatory mechanisms. These data will provide preliminary characterization of novel carbohydrate-active enzymes at high temperatures.

2023-12-31 | GSE249938 | GEO

Fervidibacter sacchari diferential proteomics under different growth conditions

Project description:Fervidibacter sacchari PD1 cells were grown with beta-glucan, gellan gum, locust bean gum, starch, or xyloglucan as sole carbon/energy sources. Cellular and secreted proteins under each condition were analyzed with DIA proteomics.

2024-03-11 | MSV000094290 | MassIVE

Widespread consumption of the common food additive xanthan gum by the human gut microbiota

Project description:The diets of industrialized countries reflect the increasing use of processed foods, often with the inclusion of novel food additives. Xanthan gum is a complex polysaccharide with unique rheological properties that have established its use as a widespread stabilizer and thickening agent. Xanthan gum’s chemical structure is distinct from the host and dietary polysaccharides that are more commonly expected to transit the gastrointestinal tract, and little is known about its direct interaction with the gut microbiota, which plays a central role in digestion of other dietary fiber polysaccharides. Here, we show that the ability to digest xanthan gum is surprisingly common in industrialized human gut microbiomes and appears contingent on a single uncultured bacterium in the family Ruminococcaceae. Our data reveal that this primary degrader cleaves the xanthan gum backbone before processing the released oligosaccharides using additional enzymes. Surprisingly, some individuals harbor a Bacteroides intestinalis that is incapable of consuming polymeric xanthan gum but grows on oligosaccharide products generated by the Ruminococcaceae. Feeding xanthan gum to germfree mice colonized with a human microbiota containing the uncultured Ruminococcaceae supports the idea that this additive can drive expansion of this primary degrader along with exogenously introduced Bacteroides intestinalis. Our work demonstrates the existence of a potential xanthan gum food chain involving at least two members of different phyla of gut bacteria and provides an initial framework to understand how widespread consumption of a recently introduced food additive influences human microbiomes.

2022-02-28 | PXD031522 | Pride

Bos taurus strain:Japanese Black Cow

Project description:miRNA in granulosa cells cultured under differential conditions

| PRJDB12696 | ENA

Bos taurus strain:Japanese Black Cow

Project description:Effect of Docosahexaenoic acid on bovine granulosa cells

| PRJDB11284 | ENA

Locust bean gum derived galacto-manno-oligosaccharides utilization by Lactobacillus plantarum WCFS1

Project description:Locust bean gum derived galacto-manno-oligosaccharides utilization by Lactobacillus plantarum WCFS1

| PRJNA482606 | ENA

Bos taurus strain:Japanese Black Cow

Project description:Micro RNA in culture medium of bovine oocyte granulosa cells complexes