Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Termite gut metagenome

ABSTRACT: 18S rRNA gene sequencing of the oxymonad and parabasalid community inhabiting the gut of termites

PROVIDER: PRJDB15577 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR454419_1.fastq.gz	Fastqsanger.gz
	DRR454419_2.fastq.gz	Fastqsanger.gz
	DRR454420_1.fastq.gz	Fastqsanger.gz
	DRR454420_2.fastq.gz	Fastqsanger.gz
	DRR454421_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 175

Similar Datasets

termite gut metagenome

Project description:18S rRNA gene sequencing of the oxymonad community inhabiting the gut of termites

| PRJDB12157 | ENA

termite gut metagenome

Project description:Gut metagenomes from 48 lower and higher termites

| PRJNA732531 | ENA

The human Gut Chip M-bM-^@M-^\HuGChipM-bM-^@M-^], an explorative phylogenetic microarray for determining gut microbiome diversity at Family level

Project description:A phylogenetic microarray targeting 66 families described in the human gut microbiota has been developped aud used to monitor the gut microbiota's structure and diversity. The microarray format provided by Agilent and used in this study is 8x15K. A study with a total of 4 chips was realized. Arrays 1 and 2: Hybridization with 100ng of labelled 16S rRNA gene amplicons from a mock community sample and 250ng of labelled 16S rRNA gene amplicons from 1 faecal sample. Each Agilent-030618 array probe (4441) was synthetized in three replicates. Arrays 3 and 4: Hybridization with 250ng of labelled 16S rRNA gene amplicons from 2 faecal samples. Each Agilent-40558 array probe (4441) was synthetized in three replicates.

2013-03-01 | E-GEOD-44752 | biostudies-arrayexpress

termite gut metagenome

Project description:Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites

| PRJNA560329 | ENA

Study of Gut Microbiome and Colorectal Tumors

Project description:Gut microbiota were assessed in 540 colonoscopy-screened adults by 16S rRNA gene sequencing of stool samples. Investigators compared gut microbiota diversity, overall composition, and normalized taxon abundance among these groups.

| 2255499 | ecrin-mdr-crc

termite gut metagenome

Project description:Bacterial communities associated with hindgut compartments of higher termites Targeted Locus (Loci)

| PRJNA305127 | ENA

termite gut metagenome

Project description:1)Termite gut survey 2)Community profiling 3)Symbiosis

| PRJNA248567 | ENA

termite gut metagenome

Project description:Microbial communities in different compartments of Labiotermes labralis gut - raw reads (16S rRNA)

| PRJNA633772 | ENA

Relating human gut metagenome and metaproteome

Project description:Gut microbiome research is rapidly moving towards the functional characterization of the microbiota by means of shotgun meta-omics. Here, we selected a cohort of healthy subjects from an indigenous and monitored Sardinian population to analyze their gut microbiota using both shotgun metagenomics and shotgun metaproteomics. We found a considerable divergence between genetic potential and functional activity of the human healthy gut microbiota, in spite of a quite comparable taxonomic structure revealed by the two approaches. Investigation of inter-individual variability of taxonomic features revealed Bacteroides and Akkermansia as remarkably conserved and variable in abundance within the population, respectively. Firmicutes-driven butyrogenesis (mainly due to Faecalibacterium spp.) was shown to be the functional activity with the higher expression rate and the lower inter-individual variability in the study cohort, highlighting the key importance of the biosynthesis of this microbial by-product for the gut homeostasis. The taxon-specific contribution to functional activities and metabolic tasks was also examined, giving insights into the peculiar role of several gut microbiota members in carbohydrate metabolism (including polysaccharide degradation, glycan transport, glycolysis and short-chain fatty acid production). In conclusion, our results provide useful indications regarding the main functions actively exerted by the gut microbiota members of a healthy human cohort, and support metaproteomics as a valuable approach to investigate the functional role of the gut microbiota in health and disease.

2017-07-19 | PXD005780 | Pride

insect gut metagenome

Project description:16S rRNA gene sequencing of bacteria associated with the gut of termites and cockroaches.

| PRJDB8349 | ENA