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Escherichia coli

ABSTRACT: Fluoroquinolone-resistant Escherichia coli isolates from river water in Japan

PROVIDER: PRJDB15631 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR456242_1.fastq.gz	Fastqsanger.gz
	DRR456242_2.fastq.gz	Fastqsanger.gz
	DRR456243_1.fastq.gz	Fastqsanger.gz
	DRR456243_2.fastq.gz	Fastqsanger.gz
	DRR456244_1.fastq.gz	Fastqsanger.gz

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Project description:Fluoroquinolone-resistant Escherichia coli isolates derived from wildlife in Japan

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Escherichia coli O157:H7 Isolates Related to the 2006 Spinach-associated Outbreak Exhibit Distinct Transcriptional Profiles

Project description:We compared the transcriptional profiles of 12 E. coli O157:H7 isolates grown to stationary phase in LB broth. These isolates possess the same two enzyme PFGE profile and are related temporally or geographically to the above outbreak. These E. coli O157:H7 isolates included three clinical isolates, five isolates from separate bags of spinach, and single isolates from pasture soil, river water, cow feces, and a feral pig. Twelve condition experiment, 12 E. coli O157:H7 isolates. Two biological replicates for isolates RM6067, RM6069, RM6101, RM6102, RM6103, RM6149, RM6655, RM6658, RM9992, RM9997, RM9998 and RM10002 independently grown to stationary phase in LB at 37°C and harvested. One replicate per array. A type 2 gene expression experimental design was used, with fluorescently labeled genomic DNA as a reference channel in each experiment as described by Lucchini, S., et al. 2005. Infect Immun 73:88-102.

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Enteropathogenic Escherichia Coli (EPEC): Does it Have a Role in Colorectal Tumourigenesis?

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