Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine sediment metagenome

ABSTRACT: Involvement of Microbial Community in Zostera marina Germination

PROVIDER: PRJDB17004 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR526471_1.fastq.gz	Fastqsanger.gz
	DRR526471_2.fastq.gz	Fastqsanger.gz
	DRR526472_1.fastq.gz	Fastqsanger.gz
	DRR526472_2.fastq.gz	Fastqsanger.gz
	DRR526473_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

marine sediment metagenome

Project description:Microbial Detoxification of Zostera marina Field

| PRJDB14314 | ENA

marine sediment metagenome

Project description:Zostera Marina Ammonification environmental

| PRJNA350672 | ENA

The genome of the seagrass Zostera marina

Project description:This dataset contains the transcriptome sequence of Zostera marina as produced by Illumina sequencing. Four tissues were sequenced, female flower in late and early stages of development, the male flower, the root and leaf tissue.

2016-01-16 | GSE67579 | GEO

Study of microbial functional structure in Xiangjiang River sediment

Project description:Xiangjiang River (Hunan, China) has been contaminated with heavy metal for several decades by surrounding factories. However, little is known about the influence of a gradient of heavy metal contamination on the diversity, structure of microbial functional gene in sediment. To deeply understand the impact of heavy metal contamination on microbial community, a comprehensive functional gene array (GeoChip 5.0) has been used to study the functional genes structure, composition, diversity and metabolic potential of microbial community from three heavy metal polluted sites of Xiangjiang River.

2016-08-02 | GSE85064 | GEO

Study of microbial functional structure in Xiangjiang River sediment

2016-08-02 | E-GEOD-85064 | biostudies-arrayexpress

The genome of the seagrass Zostera marina

2016-01-16 | E-GEOD-67579 | biostudies-arrayexpress

Identification of Arsenic Resistance Genes from Marine Sediment Metagenome.

Project description:A metagenomic library of sea sediment metagenome containing 245,000 recombinant clones representing ~ 2.45 Gb of sea sediment microbial DNA was constructed. Two unique arsenic resistance clones, A7 and A12, were identified by selection on sodium arsenite containing medium. Clone A7 showed a six-fold higher resistance to arsenate [As(V)], a three-fold higher resistance to arsenite [As(III)] and significantly increased resistance to antimony [Sb(III)], while clone A12 showed increased resistance only to sodium arsenite and not to the other two metalloids. The clones harbored inserts of 8.848 Kb and 6.771 Kb, respectively. Both the clones possess A + T rich nucleotide sequence with similarity to sequences from marine psychrophilic bacteria. Sequence and transposon-mutagenesis based analysis revealed the presence of a putative arsenate reductase (ArsC), a putative arsenite efflux pump (ArsB/ACR) and a putative NADPH-dependent FMN reductase (ArsH) in both the clones and also a putative transcriptional regulatory protein (ArsR) in pA7. The increased resistance of clone A7 to As(V), As(III) and Sb(III) indicates functional expression of ArsC and ArsB proteins from pA7. The absence of increased As(V) resistance in clone A12 may be due to the expression of a possible inactive ArsC, as conserved Arg60 residue in this protein was replaced by Glu60, while the absence of Sb(III) resistance may be due to the presence of an ACR3p-type arsenite pump, which is known to lack antimony transport ability.

| S-EPMC5574776 | biostudies-literature

marine sediment metagenome

Project description:Sediment microbial community Random survey

| PRJNA254067 | ENA

marine sediment metagenome

Project description:Microbial community in marine sediments

| PRJNA298911 | ENA

bacterials in sediment

Project description:Microbial communities in sediment near roots of Zostera marina Metagenome

| PRJNA485653 | ENA