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Glycyrrhiza uralensis

ABSTRACT: Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals

PROVIDER: PRJDB2812 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR006519.fastq.gz	Fastqsanger.gz
	DRR006520.fastq.gz	Fastqsanger.gz
	DRR006521.fastq.gz	Fastqsanger.gz
	DRR006522.fastq.gz	Fastqsanger.gz
	DRR006523.fastq.gz	Fastqsanger.gz

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Project description:Purpose: The goal of this study are to reveal the internal mechanism of Bacillus pumilus G5 and silicon increased Glycyrrhiza uralensis Fisch. seedlings drought-tolerance by RNA-Seq. Methods: mRNA profiles of Glycyrrhiza uralensis Fisch. Seedling in five treatment: control treatment, drought stress treatment, drought stress with G5 treatment, drought stress with Si treatment and drought stress with G5 combined Si treatment. Results: The full-length transcriptome sequencing of 15 samples was completed, and the clean data of each sample was 6.28GB. All the consistent transcript sequences were aligned to the reference genome by minimap2 software and then de-redundant analysis was performed. Finally, 37267 genes were obtained. A total of 6934 DEGs were identified in four comparisons (D vs CK, DB vs D, DSi vs D, and DBSi vs D), among which are 967, 1559, 1278 and 3130 DEGs in four comparisons, respectively. Conclusions: Our study help to better understand the underlying molecular mechanisms of Bacillus pumilus G5 and silicon improve the drought-tolerance of G. uralensis.

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