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Lotus japonicus

ABSTRACT: RNA-Seq analysis of mycorrhizal and non-mycorrhizal roots of Lotus japonicus

PROVIDER: PRJDB3375 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	DRR027570_1.fastq.gz	Fastqsanger.gz
	DRR027570_2.fastq.gz	Fastqsanger.gz
	DRR027571_1.fastq.gz	Fastqsanger.gz
	DRR027571_2.fastq.gz	Fastqsanger.gz
	DRR027572_1.fastq.gz	Fastqsanger.gz

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Lotus japonicus-Pto DC3000 infection

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Project description:To identify the regulatory targets of the R2R3-Myb transcription factor, LjMyb14, the gene was constitutively over-expressed in Lotus japonicus under the Lotus ubiquitin promoter. The gene expression levels of three biological replicates of the Lotus japonicus (MG20) were averaged and compared to the the gene expression levels of three independent lines of Lotus japonicus japonicus constituitively over expressing LjMyb14 using the Lotus ubiquitin promoter.

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Project description:Lotus japonicus is a model legume broadly used to study transcriptome regulation under different stress conditions and microorganism interaction. Understanding how this model plant respond gainst alkaline stress will certainly help to develop more tolerant cultivars in economically important Lotus species as well as in other legumes. In order to uncover the most important response mechanisms activated during alkaline stress, we explored by microarray analysis the transcriptome regulation occurring in the phenotypically contrasting ecotypes MG-20 and Gifu B-129 of L. japonicus after 21 days of alkaline stress.

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Project description:transcriptome analysis of roots in Lotus japonicus.

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