Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanum lycopersicum strain:Taian-kichijitsu

ABSTRACT: RNAseq in a sunlight-type plant factory

PROVIDER: PRJDB3892 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR034281.fastq.gz	Fastqsanger.gz
	DRR034282.fastq.gz	Fastqsanger.gz
	DRR034283.fastq.gz	Fastqsanger.gz
	DRR034284.fastq.gz	Fastqsanger.gz
	DRR034285.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 50

Similar Datasets

Solanum lycopersicum

Project description:tomato RNAseq in a sunlight-type plant factory

| PRJDB7208 | ENA

Solanum lycopersicum

Project description:Time-course transcriptome data of Sly-Summer in sunlight-type plant factory

| PRJDB4686 | ENA

Solanum lycopersicum

Project description:Momotaro tomato sample in a sunlight-type plant factory in 2017-11

| PRJDB7210 | ENA

Solanum lycopersicum

Project description:RNAseq in a fully controlled plant factory

| PRJDB3891 | ENA

Expression data from tomato (Solanum lycopersicum) plants in interaction with different Trichoderma strains

Project description:Trichoderma harzianum T34 is a fungal strain able to promote the plant growth and to increase plant defense responses. Trichoderma harzianum transformants expressing the amdS gene, encoding an acetamidase, of Aspergillus nidulans produce a higher plant development than the wild type T34. We used microarrays to analyze the physiological and biochemical changes in tomato plants produced as consequence of interaction with Trichoderma harzianum T34 and amdS transformants

2015-12-25 | GSE76332 | GEO

Expression data from Solanum lycopersicum after elicitor molecules treatment

Project description:After treatment with peptids, SA, JA and Et plants are primed due to the induction of plant immune system allowing to fight against plant pathogens. We used microarray analysis to study the expression pattern of the diferents genes involved in plant defense mechanisms related to biotic and abiotic stresses

2021-09-27 | GSE183707 | GEO

High-throughput sequencing of small RNAs in Solanum lycopersicum

Project description:Small RNAs (21-24 nt) are pivotal regulators of gene expression that guide both transcriptional and post-transcriptional silencing mechanisms in diverse eukaryotes, including most if not all plants. MicroRNAs (miRNAs) and short interfering RNAs (siRNAs) are the two major types, both of which have a demonstrated and important role in plant development, stress responses and pathogen resistance. In this work, we used a deep sequencing approach (Sequencing-By-Synthesis, or SBS) to develop sequence resources of small RNAs from Solanum licopersicum tissues (including leaves, flowers and fruit). The high depth of the resulting datasets enabled us to examine in detail critical small RNA features as size distribution, tissue-specific regulation and sequence conservation between different organs in this species. We also developed database resources and a dedicated website (http://smallrna.udel.edu/) with computational tools for allowing other users to identify new miRNAs or siRNAs involved in specific regulatory pathways, verify the degree of conservation of these sequences in other plant species and map small RNAs on genes or larger regions of the genome under study.

2011-09-30 | GSE32470 | GEO

Solanum lycopersicum cultivar:Moneymaker

Project description:WGBS and RNAseq from wild-type and slidm3-1 mutant tomato plants

| PRJNA974982 | ENA

Solanum lycopersicum

Project description:Solanum lycopersicum Early Developmental Analysis Through RNAseq

| PRJNA915758 | ENA

Solanum lycopersicum strain:M82 Transcriptome or Gene expression

Project description:We sequenced mRNA from immature green (15 days after anthesis) and red (Breaker+10 days) tomato (Solanum lycopersicum) fruit tissues from plants over-expressing SlGLK1 and SlGLK2 and from control plants 'M82' to compare gene expression levels between transgenic fruit and the control. Note: Samples in SRA were assigned the same sample accession. This is incorrect as there are different samples, hence “Source Name” was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.

2013-06-01 | E-MTAB-4819 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data