Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Amphibacillus sediminis NBRC 103570

ABSTRACT: Amphibacillus sediminis NBRC 103570 genome sequencing project

PROVIDER: PRJDB405 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	BCQW01.dat.gz	Other
	BCQW01.fasta.gz	Fasta.gz
	BCQW01.master.dat	Other
	BCQW01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Amphibacillus sediminis

Project description:Amphibacillus sediminis overview

| PRJNA172813 | ENA

Amphibacillus xylanus NBRC 15112

Project description:Amphibacillus xylanus NBRC 15112 Genome sequencing

| PRJNA42371 | ENA

Novosphingobium sediminis strain:NBRC 106119

Project description:Novosphingobium sediminis NBRC 106119 genome sequencing project

| PRJDB6234 | ENA

Micromonospora sediminimaris strain:NBRC 107745

Project description:Verrucosispora sediminis NBRC 107745 genome sequencing project

| PRJDB10174 | ENA

Amphibacillus jilinensis

Project description:Amphibacillus jilinensis overview

| PRJNA171716 | ENA

Amphibacillus xylanus

Project description:Amphibacillus xylanus overview

| PRJNA42485 | ENA

Expression analysis of Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant

Project description:Investigation of whole genome gene expression level changes in a Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant, compared to the wild-type strain.

2021-07-16 | GSE41775 | GEO

Amphibacillus marinus strain:cgmcc 1.10434

Project description:Amphibacillus marinus CGMCC 1.10434 genome sequencing

| PRJNA303883 | ENA

Transcriptome analysis of Bacillus subtilis NBRC 16449 grown on surface of boiled soybeans under the similar condition to production of Japanese traditional soybean-fermented food "natto"

Project description:Purpose:The goals of this study are to clarify the B. subtilis NBRC 16449 response to soybeans. Methods: B. subtilis NBRC 16449 cells were aerobically cultured in liquid LB, LB solidified with agar, or on surface of boiled soybeans to logarithmic growth phase. Total RNAs were extracted from bacterial cells by Hot-Phenol method. Samples for RNA-seq were prepared according to Illmina protocol available from the manufacture. The sequence reads that passed quality filters were analyzed at the transcript isoform level with bowtie v0.11.2. Results: Using an optimized data analysis workflow, we mapped around 15 million sequence reads per sample to the whole genome of B. subtilis BEST195 and identified 4271 transcripts in B. subtilis NBRC 16449 with Bowtie aligner. Read count per genome was extracted from known gene annotations with HTSeq program. Compared the transcriptomes of B. subtilis NBRC 16449 grown on LB solidified with agar to that grown on surface of boiled soybeans, about 5% of genes showed the different expression levels.

2020-11-02 | GSE109523 | GEO

Amphibacillus cookii strain:DSM 23721 | isolate:DSM 23721

Project description:Amphibacillus cookii DSM 23721 genome sequencing

| PRJNA695732 | ENA