Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Collybia sordida

ABSTRACT: Genome sequence analysis of a fairy ring-forming fungus Lepista sordida

PROVIDER: PRJDB4143 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	DRR043262_1.fastq.gz	Fastqsanger.gz
	DRR043262_2.fastq.gz	Fastqsanger.gz
	DRR043263_1.fastq.gz	Fastqsanger.gz
	DRR043263_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Collybia sordida

Project description:Transcriptome analysis of a fairy ring-forming fungus Lepista sordida

| PRJDB10644 | ENA

Gene expression profiling of rice seedling with 2-azahypoxanthine

2011-04-14 | GSE14778 | GEO

Draft Genome Sequence of Lepista sordida

Project description:Draft Genome Sequence of the Fairy Ring Forming Basidiomycete Fungus Lepista sordida

| PRJEB19353 | ENA

Draft Genome Sequence of Lepista sordida

Project description:Draft Genome Sequence of the Fairy Ring Forming Basidiomycete Fungus Lepista sordida

| PRJEB21200 | ENA

Collybia sordida

Project description:Lepista sordida overview

| PRJNA715272 | ENA

Gene expression profiling of rice seedling with 2-azahypoxanthine

Project description:Rings or arcs of fungus-stimulated plant growth occur often on the floor of woodlands which are commonly called “fairy rings”. We purified a plant growth-stimulating compound, 2-azahypoxanthine (AHX), from the fairy ring-forming fungus Lepista sordida, and the detection of AHX in the fungus-infected soil near the growth-stimulated turfgrass roots. The growth-promoting activity of AHX towards rice was further analyzed by oligo DNA microarrays. Immediately after germination, rice seedlings were treated with AHX and incubated for 2 weeks. Total RNA was isolated from the seedlings using an RNeasy plant mini kit (Qiagen). cDNA was synthesized to provide 400 ng of total RNA (Agilent Technologies). This cDNA was used as a template to synthesize cRNA. The cRNA was labeled with Cyanine-3 (Cy3) CTP or Cyanine-5 (Cy5) CTP. Cy3-labeled cRNA was mixed with the same amount of Cy5-labeled cRNA and the mixture was used for hybridization. After hybridization for 17 h at 65°C, the slides were washed and scanned with an Agilent Microarray Scanner. Genes showing a signal value below 300 in the Cy3 channel of the control were excluded from the analysis. Feature extraction and image analysis software (version A.6.1.1; Agilent Technologies) were used to locate and delineate each spot in the array and to integrate each spot’s intensity, filtering, and normalization. We attempted dye swap experiments to estimate the error of technical and dye labelling. Three-condition experiment, control vs. compound-treated rice (0.05 and 0.2 mM). Biological replicates: control, 0.05 mM AHX-treated, 0.2 mM AHX-treated rice independently grown and harvested. One replicate per array.

2011-04-14 | E-GEOD-14778 | biostudies-arrayexpress

Imidazole-4-carboxamide (ICA) effect on Oryza sativa

Project description:Fairy rings are zones of stimulated grass growth by the interaction between the fungi and the plant. In the previous research, we reported the identification of the “fairy”, ICAproduced by the fairy ring-forming fungus and the mechanism of its growth-inhibiting activity using DNA microarray. We invetigate expression profiling of rice seedlings treated with ICA for the mechanism of its growth-inhibiting activity.

2019-07-26 | GSE100899 | GEO

AHX and AOH effect on Oryza sativa

Project description:Fairy rings are zones of stimulated grass growth by the interaction between the fungi and the plant. In the previous research, we reported the identification of the “fairy”, 2-azahypoxanthine (AHX), produced by the fairy ring-forming fungus and the mechanism of its growth-promoting activity using DNA microarray. We discovered AOH, a common metabolite of AHX in plants. We investigate expression profiling of rice seedlings treated with AHX or AOH for the mechanism of their growth-promoting activity.

2014-01-01 | GSE38844 | GEO

AHX and AOH effect on Oryza sativa

Project description:Fairy rings are zones of stimulated grass growth by the interaction between the fungi and the plant. In the previous research, we reported the identification of the M-bM-^@M-^\fairyM-bM-^@M-^], 2-azahypoxanthine (AHX), produced by the fairy ring-forming fungus and the mechanism of its growth-promoting activity using DNA microarray. We discovered AOH, a common metabolite of AHX in plants. We investigate expression profiling of rice seedlings treated with AHX or AOH for the mechanism of their growth-promoting activity. Three-condition experiment, control vs. AHX-treated rice (50 and 200 mM) and AOH-treated rice (50 and 200 mM).

2014-01-01 | E-GEOD-38844 | biostudies-arrayexpress

Collybia sordida strain:Lds5

Project description:Collybia sordida strain:Lds5 Genome sequencing and assembly

| PRJNA1061567 | ENA