Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus

ABSTRACT: Genome sequencing of C57BL/6 iPS and ES cells

PROVIDER: PRJDB44 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR001855_1.fastq.gz	Fastqsanger.gz
	DRR001855_2.fastq.gz	Fastqsanger.gz
	DRR001856_1.fastq.gz	Fastqsanger.gz
	DRR001856_2.fastq.gz	Fastqsanger.gz
	DRR001857_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Mus musculus strain:C57BL/6

Project description:Genome sequencing of C57BL/6 iPS and nuclear-transfer ES cells

| PRJDB4618 | ENA

Mus musculus

Project description:Mouse ES cells vs. iPS cells

| PRJNA127527 | ENA

Mus musculus

Project description:Expression data from mouse ES and iPS cells

| PRJNA117639 | ENA

Mus musculus

Project description:Expression data from mouse ES and iPS cells

| PRJNA125973 | ENA

Mus musculus

Project description:Transcriptomic profiling of murine ES and iPS cells, embryoid bodies, and ES and IPS cell-derived cardiomyocytes

| PRJNA118277 | ENA

Bidirectional Introgression between Mus musculus domesticus and Mus spretus.

Project description:Introgressed variants from other species can be an important source of genetic variation because they may arise rapidly, can include multiple mutations on a single haplotype, and have often been pretested by selection in the species of origin. Although introgressed alleles are generally deleterious, several studies have reported introgression as the source of adaptive alleles-including the rodenticide-resistant variant of Vkorc1 that introgressed from Mus spretus into European populations of Mus musculus domesticus. Here, we conducted bidirectional genome scans to characterize introgressed regions into one wild population of M. spretus from Spain and three wild populations of M. m. domesticus from France, Germany, and Iran. Despite the fact that these species show considerable intrinsic postzygotic reproductive isolation, introgression was observed in all individuals, including in the M. musculus reference genome (GRCm38). Mus spretus individuals had a greater proportion of introgression compared with M. m. domesticus, and within M. m. domesticus, the proportion of introgression decreased with geographic distance from the area of sympatry. Introgression was observed on all autosomes for both species, but not on the X-chromosome in M. m. domesticus, consistent with known X-linked hybrid sterility and inviability genes that have been mapped to the M. spretus X-chromosome. Tract lengths were generally short with a few outliers of up to 2.7 Mb. Interestingly, the longest introgressed tracts were in olfactory receptor regions, and introgressed tracts were significantly enriched for olfactory receptor genes in both species, suggesting that introgression may be a source of functional novelty even between species with high barriers to gene flow.

| S-EPMC8784167 | biostudies-literature

Mus musculus

Project description:DNA methylation data from mouse iPS cells, ES cells, and ntES cells

| PRJNA128057 | ENA

Mus musculus strain:C57BL/6J

Project description:Genome sequencing of iPS and nuclear-transfer ES cells from identical somatic cells

| PRJDB3439 | ENA

Testis expression in Mus musculus domesticus x Mus musculus musculus hybrid zone mice

Project description:We collected whole genome testis expression data from hybrid zone mice. We integrated GWAS mapping of testis expression traits and low testis weight to gain insight into the genetic basis of hybrid male sterility.

2014-12-04 | GSE61417 | GEO

Mus musculus

Project description:Expression of Stem Cell Pluripotency genes in mASCs and ES, iPS, and mi-iPS cells

| PRJNA139111 | ENA