Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Garcinia mangostana

ABSTRACT: De novo Assembly and Comparative Transcriptome Analyses of two physiological disorders (Translucent Flesh and Gamboge Disorders) in mangosteen (Garcinia mangostana L.) fruit.

PROVIDER: PRJDB5091 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR067238.fastq.gz	Fastqsanger.gz
	DRR067239.fastq.gz	Fastqsanger.gz
	DRR067240.fastq.gz	Fastqsanger.gz
	DRR067241.fastq.gz	Fastqsanger.gz
	DRR067242.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Garcinia mangostana strain:Wanayasa

Project description:Comparative Transcriptome Analysis of Translucent Flesh Disorder in mangosteen (Garcinia mangostana L.) fruit

| PRJDB5296 | ENA

Garcinia mangostana strain:Wanayasa

Project description:Construction of reference sequences from Garcinia mangostana L. (mangosteen) fruit

| PRJDB5675 | ENA

Garcinia mangostana strain:Wanayasa

Project description:Comparative Transcriptome Analysis of Gamboge Disorder in Mangosteen (Garcinia mangostana L.) fruit

| PRJDB5297 | ENA

Garcinia mangostana

Project description:Garcinia mangostana transcriptome

| PRJNA339916 | ENA

Garcinia mangostana

Project description:Garcinia mangostana Organism overview

| PRJNA316633 | ENA

Garcinia mangostana

Project description:Garcinia mangostana Raw sequence reads

| PRJNA395504 | ENA

Garcinia mangostana

Project description:Garcinia mangostana Genome sequencing and assembly

| PRJNA301534 | ENA

Garcinia mangostana

Project description:Garcinia mangostana Transcriptome or Gene expression

| PRJNA279326 | ENA

Garcinia mangostana

Project description:Garcinia mangostana Transcriptome or Gene expression

| PRJNA321150 | ENA

SWATH-MS dataset of Garcinia mangostana pericarp’s proteome across ripening stages

Project description:Data provided is derived from our research on comparing protein expression profiling of Garcinia mangostana (G. mangostana) Linn. on different ripening stages. Proteins were extracted from the pericarp of G. mangostana at three points of ripening stages (stage 0, 2 and 6) and digested with trypsin before being analyzed using 1 Dimensional and 2 Dimensional Information Dependent Acquisition Liquid Chromatography (1D and 2D IDA LC) coupled with sequential window acquisition of all theoretical fragment ion spectra (SWATH) analysis. This approach enable us to identify and relatively quantify protein in complex mixture. Protein identification was performed by matching tandem mass (MS/MS) spectra from 1D and 2D IDA to in-house-generated and UniProt databases using a database search algorithm software ProteinPilot (v4.2) (AB Sciex). Protein quantification was performed by analyzing protein peak areas extracted from SWATH analysis data sets using PeakView (v2.1) (AB Sciex) software. Finally, protein peaks were subjected to statistical analysis to compare relative protein peak areas between the sample groups.

2021-05-24 | PXD006295 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data