Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gasterosteus aculeatus

ABSTRACT: WGS of Japanese freshwater populations

PROVIDER: PRJDB5097 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR067125_1.fastq.gz	Fastqsanger.gz
	DRR067125_2.fastq.gz	Fastqsanger.gz
	DRR067126_1.fastq.gz	Fastqsanger.gz
	DRR067126_2.fastq.gz	Fastqsanger.gz
	DRR067127_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

Gasterosteus aculeatus

Project description:ddRAD-seq of Japanese threespine stickleback populations

| PRJDB7610 | ENA

Marine and freshwater three-spined stickleback (Gasterosteus aculeatus) gene expression differences

2011-12-30 | GSE34783 | GEO

Gasterosteus aculeatus

Project description:Whole genome re-sequencing of Japanese freshwater threespine sticklebacks

| PRJDB7611 | ENA

Marine and freshwater three-spined stickleback (Gasterosteus aculeatus) gene expression differences

Project description:In order to identify gene expression difference between marine and freshwater stickleback populations, we compared the transcriptomes of seven adult tissues (eye, gill, heart, hypothalumus, liver, pectoral muscle, telencephalon) between a marine population sampled from the mouth of the Little Campbell river in British Columbia (LITC) and a freshwater population (Fishtrap Creek, FTC) from northern Washington. For each population, the sampled individuals were the lab-reared progeny of a single pair of wild-caught parents. Four to five fish from each population were used as biological replicates for each of the seven tissues. For each population, the sampled individuals were the lab-reared progeny of a single pair of wild-caught parents. All fish were of similar age and were raised in the same aquarium (salinity: 3.5 ppt), with a plastic divider separating the marine and freshwater groups. One male and four females were sampled from each population. Microarray experiments were performed in a 2-color format on custom Agilent arrays: experimental RNA samples were labeled with Cy5, and the common reference RNA sample was labeled with Cy3. The reference RNA was total RNA isolated from a large number of 7-day-post-hatch embryos from the freshwater population of Bear Paw Lake, Alaska (BEPA). One technical replicate was used for each array, and one of the hypothalamus samples (Hyp_FTC#3) was excluded from further analysis due to poor quality indicators. FTC#1 liver and LITC#2 pectoral muscle samples did not yield RNA of sufficient quality for the microarray experiment, and were also excluded from hybridization.

2011-12-30 | E-GEOD-34783 | biostudies-arrayexpress

Gasterosteus aculeatus

Project description:Population genetic divergence in male territorial aggressiveness of the Japanese freshwater threespine stickleback

| PRJDB18785 | ENA

Gasterosteus aculeatus aculeatus

Project description:Japanese sympatric sticklebacks brain miRNA

| PRJDB2384 | ENA

Gasterosteus aculeatus

Project description:Whole genome seq of Japanese symaptric threespines

| PRJDB2614 | ENA

Gasterosteus aculeatus

Project description:Phylogenetic analysis of Japanese three-spined stickleback